BAC Information

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BAC

Clone NameMSMg01-081J23
Chromosome2 (Build37)
Map Location 167,387,577 - 167,387,866
singlet/doubletsinglet
Overlap genenone
Upstream geneBC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1
Downstream geneUbe2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081J23.T7 (MSMg01no081_j23.b1)MSMg01-081J23.TJ (MSMg01no081_j23.g1)
ACCAG302182AG302183
length733725
length of high quality
(start - end)
231 (48 - 278)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no081_j23.b1 PHD_FILE: MSMg01no081_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:53 2005CHROMAT_FILE: MSMg01no081_j23.g1 PHD_FILE: MSMg01no081_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCACTTTGTTTCCCAGGCAGGTCTCAAACTCTTTTTGCCTACGCCT
CTGTGCTGGCTAGTTTTATGTCAATGTGACACACCATGCTAGAGGGACCT
CAGTTGAGAAGAGGCCTACATAAGATCCAGCTGCGAGTTGTTTTCTTAAT
TGGTGATCCACGAGGAAGCGCCCAGCCATTGTGGGAGGGGCCATCCCTGG
GCTGGAGATCCTGGGGTCTATGAGAAAGCAGACAGAGTAAGCCATGGGAA
GCAAGCCAGTAAGCAGCTCCTGCTTCCAGGTTTCTGCCCCGCTTGAGATC
CTGTTCTGACATCCTCCAGTGATGGACTATGATGTGGAAGCCAAATAAAC
CCTTTCCTCCTCAACTTCTTTTGGTCATGGTGTTTTACCTCATCGATAGT
CCCCCTCCTGAGGGATGTCAGTGTGCGCCACCACACCCTGCTTTGATTTG
CTTTGTTTTGTTTTGTTTTGTTTTGCATTGCTTTGCTTGAGACAGGTTTT
CTCCTGTACGTCCTTGTTTGTTCTGCAACTCCCAATGTAAAACCAGTTTG
TTCTCTAAACTTAAATATCTGTCTGTAATTTGCTTCCCAAGTGCTGGGTA
AAAAGGAGTATTGTCATCATTGCTCATGTTCCTCTTCCTGATTAAAGTTG
TCTTTATATTGTTTTGACATTTCTTCCTATTTT
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACTGGCGGCAGGCAGGCAGGCAGG
CCGGCGGGCAGGGCAGCTCTGGCCCCTAGGCCCCCATCCTGCCAGGGTGC
TTGCTGGTCCTGCAGCTGGAAATGAGCCTTCCCTGGCTGGCAGAGCCTCG
CCCCCCATCCCTGCCCCTCCCTTCACCTGGCCCTCTGCCCGGCTGTAGCT
CAGGAAACCTGTCCCTTGTTAACCAAGTCGCCAGAAAGAAAAGAAAAAGC
TTTAGCATCCACCCTGGTTTTGTCCGTTCATCAATCTCTTTTTTTGCATT
TATGAACACCTACTGTGTGCTAGGGTGGGTGCAGAGGTTGTGCGTTAGCA
CAGAGTCCCACTTTCTTGACCCCCCAGCCAGGGAGAGGAGTAGGAAGCTA
GTGATGAAAATAGGTGAGATGGTGCACGCCTATAGTCCCAGCCACTTTGA
GACAGAGTCTCAACAGCACATATGACCAGCGAGTTCAAGATCAGCCTATG
TTACTTAGTGAGACCATGTCTCAAAATAAAGAGTCTGATTGTTGCCACAC
ACCTGTGACTACCCAGCATCTGTAACATGGATATAGCAGTTCAAAGCTAT
GCTGAACTACTTGAGACTCTGTCCTCCAAACACTACGCGCGCCAAGAACC
TTAAAAGGTGCCCCCCCTCACTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_j23.g1 MSMg01no081_j23.g1 CHROMAT_FILE:
MSMg01no081_j23.g1 PHD_FILE: MSMg01no081_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:53 2005
         (294 letters)



>mm_chr2_167387339_167388032
          Length = 694

 Score =  542 bits (280), Expect = e-158
 Identities = 289/294 (98%), Gaps = 4/294 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactggcggcaggcaggcaggcaggccggcgggcagggcagctctggcccctaggcccc 60
           ||||||||    |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 528 tcactggc----ggcaggcaggcaggccggcgggcagggcagctctggcccctaggcctc 473

                                                                       
Query: 61  catcctgccagggtgcttgctggtcctgcagctggaaatgagccttccctggctggcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 catcctgccagggtgcttgctggtcctgcagctggaaatgagccttccctggctggcaga 413

                                                                       
Query: 121 gcctcgccccccatccctgcccctcccttcacctggccctctgcccggctgtagctcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcctcgccccccatccctgcccctcccttcacctggccctctgcccggctgtagctcagg 353

                                                                       
Query: 181 aaacctgtcccttgttaaccaagtcgccagaaagaaaagaaaaagctttagcatccaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaacctgtcccttgttaaccaagtcgccagaaagaaaagaaaaagctttagcatccaccc 293

                                                                 
Query: 241 tggttttgtccgttcatcaatctctttttttgcatttatgaacacctactgtgt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tggttttgtccgttcatcaatctctttttttgcatttatgaacacctactgtgt 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)