Query= MSMg01no081_m07.b1 MSMg01no081_m07.b1 CHROMAT_FILE:
MSMg01no081_m07.b1 PHD_FILE: MSMg01no081_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:05 2005
(488 letters)
>mm_chr2_178362584_178363476
Length = 893
Score = 857 bits (443), Expect = 0.0
Identities = 478/491 (97%), Gaps = 7/491 (1%)
Strand = Plus / Minus
Query: 4 ggaa-ttcccccctacgcgtctagggtgggtctttcctcctctcag-accattactgggt 61
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 693 ggaatttcccccctacgtgtctagggtgggtctttcctcctctcagaaccattactgggt 634
Query: 62 cttaatttcccttgttctctggtcccttctctccttccgggattctttaaggaggtgtgg 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cttaattttccttgttctctggtcccttctctccttccgggattctttaaggaggtgtgg 574
Query: 122 atcttaaggggttactgtccgcatggttcggctctccttgtatctacacatccctgtggg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atcttaaggggttactgtccgcatggttcggctctccttgtatctacacatccctgtggg 514
Query: 182 attcctgaagtgtcctgaaagctttagctgtgtcttctctgccctctgcccacagatcag 241
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 513 attcctgaagtgtcctgaaagctttagctgtgtctcctctgccctctgcccacagatcag 454
Query: 242 cttgggattttgatgttcccatttctaacttcctggcttctgtgcctacctggtttgggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cttgggattttgatgttcccatttctaacttcctggcttctgtgcctacctggtttgggg 394
Query: 302 tgtacctatctctctttgctcttttaagtctgctcactgaaccggctagccctgctccga 361
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 393 tgtacttatctctctttgctctttttagtctgctcactgaaccggctagccctgctccga 334
Query: 362 gagcgtctggctccttccatctgttgcactggtatcgcacgtgtctactgttgatt---c 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 333 gagcgtctggctccttccatctgttgcactggtatcgcacgtgtctactgttgattctcc 274
Query: 419 tcaagtgtctgctgccccacc-cttctaagctccaagcactgagcccattgcttttcttc 477
||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 273 tcaagtgtctgctgccccaccgc-tctaagctccaagcactgaacccattgcttttcttc 215
Query: 478 cagggaatgag 488
|||||||||||
Sbjct: 214 cagggaatgag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 893
Length adjustment: 10
Effective length of query: 478
Effective length of database: 883
Effective search space: 422074
Effective search space used: 422074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_m07.g1 MSMg01no081_m07.g1 CHROMAT_FILE:
MSMg01no081_m07.g1 PHD_FILE: MSMg01no081_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:05 2005
(440 letters)
>mm_chr2_178197869_178198707
Length = 839
Score = 781 bits (404), Expect = 0.0
Identities = 431/440 (97%), Gaps = 1/440 (0%)
Strand = Plus / Plus
Query: 1 actatgtagtagagtattcccttaagtttctagtcttgcctctaactctgcagtgctggg 60
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 actatgtagtagagaattcccttaagtttctggtcttgcctctaactctgcagtgctggg 260
Query: 61 actgtgggtgtgcaccaccatgcttgctttgtgtggtgctggggatcaagcacagtacct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtgggtgtgcacccccatgcttgctttgtgtggtgctggggatcaagcacagtacct 320
Query: 121 tgtgagggctaggcaagggcaggactggttgggccgcattcccattccctttaaacacgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgtgagggctaggcaagggcaggactggttgggccgcattcccattccctttaaacaggc 380
Query: 181 ttctccaactaaaagttcttttaatctcctgggtttaaaacattttaaacatctgaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctccaactaaaagttcttttaatctcctgggtttaaaacattttaaacatctgaagtg 440
Query: 241 taaacattggttgcatgtgtgatgagcagaagaatctatctactacatgcaatggagtag 300
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 taaacattggg-gcatgtgtgatgagcagaagaatctatctactacatgcagtggagtag 499
Query: 301 ctggccctggagggaaatagtcttgccatattttataggtgagcaaataaaagatcagac 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 ctggccctggagggaaatagtcttgccatattttataggtgaggaaataaaagatcagac 559
Query: 361 cgatccctttatatagagtcacatagctgagagggtgggttctgacagggcactgcaatg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 cgatccctttatatagagtcacatagctgagagggtggcttctgacagggcactgcaatg 619
Query: 421 ctgagtctttgtggctttca 440
||||||||||||||||||||
Sbjct: 620 ctgagtctttgtggctttca 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 839
Length adjustment: 9
Effective length of query: 431
Effective length of database: 830
Effective search space: 357730
Effective search space used: 357730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
