BAC Information

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BAC

Clone NameMSMg01-081M14
Chromosome2 (Build37)
Map Location 95,930,962 - 95,931,423
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081M14.T7 (MSMg01no081_m14.b1)MSMg01-081M14.TJ (MSMg01no081_m14.g1)
ACCAG302308AG302309
length702707
length of high quality
(start - end)
469 (67 - 535)462 (64 - 525)
definitionCHROMAT_FILE: MSMg01no081_m14.b1 PHD_FILE: MSMg01no081_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:06 2005CHROMAT_FILE: MSMg01no081_m14.g1 PHD_FILE: MSMg01no081_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTAGCTCTGAGTGCCATTTTTAATGGGGTTATTTGATTTTCTGGAGT
CCACCCTCATGAGTTCTTTATATATATTAGATATTAGTCTCCTATCTGAT
TTCAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCATTGCAGAAGCTTTGCAATTTTATGAGGTCCC
ATCTGTCGATTCTCGATCTTATAGCACAAGCCATTGCTGTTCTATTCAAG
AATATTTCCCCTGTGCCCATATATTTGAAGCTTTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGCCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAC
ATTTAACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTA
CATGATAATTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTT
TTTCCACTGGATGGTTTTAGCTCCTTTGTCCAAGACCAAGTGACCATAGG
TGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGT
CTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTGCTCTGTAGCA
CAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGCCCTTTTATCCTTGA
GA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTATCACACACAGATGAAGACAACTTCTACCTGAATA
TGGAGATCCCAAAATTTTTGTTAGGGGTAAATTTTTCTCAATAAATAACA
ATTAAAAATTAGTTTCAAAATGAATGTATCATGAGGCACATGTCTCTGTA
TCCTGCGTGCTATATGTTAGGGATCTATGGCAGCTTTGATTCTGAATATC
TAGCATGTGCACTTCACACTGTGCCTGAATGCAATCACACCATATAATGC
CAACCGGCAATACCCAAAACAATTCACTTACATTCCAGGATATAGTAGCT
AAAAATATAGGAAAAGTTATCATCCTTTTGATAAGATAATGTAGTTTTAC
TTTCTATAATTTCCACCCCATAGCTCAGTTTCTAAAAGAAGCCCCAAGGT
TCTGTTGGGTTTCTCTATTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTCCCTTGTCTTTTGTTGCTCACCACTCCATCTTTATCCC
ATACCATACTAATACTCAGTAGTCTCTCCCATTCCCTCTCTTAACATTTC
TTTTTCCCCCCCTTGTTTATTTTCATGCCAATTTTAATCCACTTCCACTG
ACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_m14.g1 MSMg01no081_m14.g1 CHROMAT_FILE:
MSMg01no081_m14.g1 PHD_FILE: MSMg01no081_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:06 2005
         (462 letters)



>mm_chr2_95930762_95931623
          Length = 862

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcacacacagatgaagacaacttctacctgaatatggagatcccaaaatttttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatcacacacagatgaagacaacttctacctgaatatggagatcccaaaatttttgtta 260

                                                                       
Query: 61  ggggtaaatttttctcaataaataacaattaaaaattagtttcaaaatgaatgtatcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtaaatttttctcaataaataacaattaaaaattagtttcaaaatgaatgtatcatg 320

                                                                       
Query: 121 aggcacatgtctctgtatcctgcgtgctatatgttagggatctatggcagctttgattct 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcacatgcctctgtatcctgcgtgctatatgttagggatctatggcagctttgattct 380

                                                                       
Query: 181 gaatatctagcatgtgcacttcacactgtgcctgaatgcaatcacaccatataatgccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatatctagcatgtgcacttcacactgtgcctgaatgcaatcacaccatataatgccaa 440

                                                                       
Query: 241 ccggcaatacccaaaacaattcacttacattccaggatatagtagctaaaaatataggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggcaatacccaaaacaattcacttacattccaggatatagtagctaaaaatataggaa 500

                                                                       
Query: 301 aagttatcatccttttgataagataatgtagttttactttctataatttccaccccatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttatcatccttttgataagataatgtagttttactttctataatttccaccccatag 560

                                                                       
Query: 361 ctcagtttctaaaagaagccccaaggttctgttgggtttctctattgagctctctctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagtttctaaaagaagccccaaggttctgttgggtttctctattgagctctctctctc 620

                                                     
Query: 421 tctctctctctctctctctctctctctctctctctctctctc 462
           ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 tctctctctctctctctctctctctctctctctctttctctc 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)