BAC Information

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BAC

Clone NameMSMg01-081O24
Chromosome2 (Build37)
Map Location 90,983,132 - 90,983,426
singlet/doubletsinglet
Overlap geneMadd
Upstream geneLOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3
Downstream geneNr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O24.T7 (MSMg01no081_o24.b1)MSMg01-081O24.TJ (MSMg01no081_o24.g1)
ACCAG302423AG302424
length708698
length of high quality
(start - end)
301 (42 - 342)341 (68 - 408)
definitionCHROMAT_FILE: MSMg01no081_o24.b1 PHD_FILE: MSMg01no081_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:18 2005CHROMAT_FILE: MSMg01no081_o24.g1 PHD_FILE: MSMg01no081_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCACTGGTACCTACAATTCCAAAATCCACAGCTAGAGCCAGAGCTGGC
CTCTAGCTCTCATGTGGAATGCTCACCCTGGCTCTGAGACAGTAGTAGCC
TTTGGAAGCTCTAGAGCAGGGGAAATGGCAGCTTGGCAGGGCTCCTGTCA
CAAGTCCACCCCTCCCTGTGCTGCAGTGTCGAGAGCTGTACTACTGTGTG
AAGGACAGCATGGAACGTGCTGCTGCCCGACAGCAAAGCATCAAACCTGG
TGAGGAGTAGACCCTTCTCGCACCCCTCACACACCCCTATCCCCACCCCC
ACGTCGTAGCCCCCTCCTCACCACATACCCCCTCAGAAAGTTGGTCTGTG
GTATTTGCATCTCACATGTCAGCTGACGCCTTCCTTTCACCACTGGGTCT
GAGCTAGGTGTTGAGTCCCCTGTGTAGGACTATGACAACTGGAAAGGGCG
GTTTGCTTCTAGTCTCCCTGGAATGTAACTTCTTCACGTTCATGTACCCC
CACCTTTGCCCTCTCGTTTCCCCCGCCGCCTCCGTTCCTACTGTTTTCGC
CTACTTATATTCGTTCCCACGTCCCTCGCGTTTTTTTCCTGCGCCTTATT
CCCATACCTCTATTTTTTCCCTTTTTTTATCGTTTTTTTCCCCCCCCCTC
TCCTTTTA
ATGTGGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAAGACCTACCTGCCTCTGCCTCCTGAGTGCT
GGGACTCAGGCGTTTGCCACCACACCTGGATTTGAAATATATTTAGAGTC
AGAAACCAATCGGGCAAGTTGTTCTGTGGGGTTTTTTTTTTTTTTTGGTT
TTTGTTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGACTGTC
CTGGAACTCACCCTGTAGCCCAGGCTGGCCTCGAACTCAGAAATCCGCCT
GCCTCTGCCTCCTGAGTGTTGGGACTAAAGGCGTGCGGCACCAATGCCTG
GCTGTTCTGTGTTTTTATAGCCTGCTTAGGTGTTTTCATCTTTGTTTAAA
GATGGGTACATTTAGACTGGATATGCTATTATATGCCTGAAATTCTAGTA
CATGGAATGCTGAGGCAGGAGGGTAAGGAATTGGAGGCCAGCCTATGTGA
AAACCCCCTAAGGAATACAAAAATTAAAGTAGGTCACCTTGTTTATTTTT
TTAAAAAAAGCGTATAGGATAATTTAAATCAGGCAATTATTACTTAGAAT
TGTTGACTGAGGTAGGGTCTTTATGTTCAGCTTCTTGATTGTCCATCCAT
CCCTATGCATGTTCTCTAAGACCTGGGTGGATCAGTAAGCGGCTTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o24.b1 MSMg01no081_o24.b1 CHROMAT_FILE:
MSMg01no081_o24.b1 PHD_FILE: MSMg01no081_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:18 2005
         (301 letters)



>mm_chr2_90982928_90983629
          Length = 702

 Score =  503 bits (260), Expect = e-147
 Identities = 286/298 (95%), Gaps = 7/298 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcactg----gtacctacaattccaaaatccacagctagagccagagctggcc 60
           |||||||||||||    ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattcctcactgggaagt---tacaattccaaaatccacagctagagccagagctggcc 443

                                                                       
Query: 61  tctagctctcatgtggaatgctcaccctggctctgagacagtagtagcctttggaagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctagctctcatgtggaatgctcaccctggctctgagacagtagtagcctttggaagctc 383

                                                                       
Query: 121 tagagcaggggaaatggcagcttggcagggctcctgtcacaagtccacccctccctgtgc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tagaacaggggaaatggcagcttggcagggctcctgtcacaagtccacccctccctgtgc 323

                                                                       
Query: 181 tgcagtgtcgagagctgtactactgtgtgaaggacagcatggaacgtgctgctgcccgac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tacagtgtcgagagctgtactactgtgtgaaggacagcatggaacgtgctgctgcccgac 263

                                                                     
Query: 241 agcaaagcatcaaacctggtgaggagtagacccttctcgcacccctcacacaccccta 298
           |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||
Sbjct: 262 agcaaagcatcaaacctggtgaggaacagacccttcacgcacccctcacacaccccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 702
Length adjustment: 9
Effective length of query: 292
Effective length of database: 693
Effective search space:   202356
Effective search space used:   202356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)