BAC Information

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BAC

Clone NameMSMg01-082A19
Chromosome2 (Build37)
Map Location 167,387,445 - 167,387,866
singlet/doubletsinglet
Overlap genenone
Upstream geneBC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1
Downstream geneUbe2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A19.T7 (MSMg01no082_a19.b1)MSMg01-082A19.TJ (MSMg01no082_a19.g1)
ACCAG302509AG302510
length677674
length of high quality
(start - end)
428 (70 - 497)427 (68 - 494)
definitionCHROMAT_FILE: MSMg01no082_a19.b1 PHD_FILE: MSMg01no082_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:26 2005CHROMAT_FILE: MSMg01no082_a19.g1 PHD_FILE: MSMg01no082_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACXXXXXXXXXXXXXXXXXXXXXXCTTTCCACGACAGGANCCGCGGAA
TTCACTTTGTCGCTCAGGCAGGTCTCAAACTCTTTTTGCCTACGCCTCTG
TGCTGGCTAGTTTTATGTCAATGTGACACACCATGCTAGAGGGACCTCAG
TTGAGAAGAGGCCTACATAAGATCCAGCTGCGAGTTGTTTTCTTAATTGG
TGATCCACGAGGAAGCGCCCAGCCATTGTGGGAGGGGCCATCCCTGGGCT
GGAGATCCTGGGGTCTATGAGAAAGCAGACAGAGTAAGCCATGGGAAGCA
AGCCAGTAAGCAGCTCCTGCTTCCAGGTTTCTGCCCCGCTTGAGATCCTG
TTCTGACATCCTCCAGTGATGGACTATGATGTGGAAGCCAAATAAACCCT
TTCCTCCCCAACTTCTTTTGGTCATGGTGTTTTACCTCAGTGATAGTCCC
CCTCCTGAGGGATGTCAGTGTGCGCCACCACACCCTGCTTTGTTTTGTTT
TGTTTCGCTTTGTTTTGTTTTGTTTTGCTTTGTTTGAGACAGGGTTTCTC
TGTACAGCCCTGGCTGTCCTGGAACTCACACTGCAGACCAGGCTGGCCTC
GAACTCAGAAATCCGCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGT
GTGCGCCACCCCTGCCCCAGTCCCCTA
TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACTGGCGGCAGGCAGGCAGGCAGGCCGGCGG
GCAGGGCAGCTCTGGCCCCTAGGCCCCCATCCTGCCAGGGTGCTTGCTGG
TCCTGCAGCTGGAAATGAGCCTTCCCTGGCTGGCAGAGCCTCGCCCCCCA
TCCCTGCCCCTCCCTTCACCTGGCCCTCTGCCCGGCTGTAGCTCAGGAAA
CCTGTCCCTTGTTAACCAAGTCGCCAGAAAGAAAAGAAAAAGCTTTAGCA
TCCACCCTGTTTTTGTCCGTTCATCAATCTCTTTTTTTGCATTTATGAAC
ACCTACTGCGCGCTAGGGTGGGTGCAGAGGTTGTGCGTTAGCACAGAGTC
CCACTTTCTTGACCCCCCAGGCAGGGAGAGGAGTAGGAAGCTAGTGATGA
AAATAGGTGAGATGGGGCACGCCTATAGCCCCAGCCACTTTGATACAGAG
TCAGAACAGCAAATAGGACCAGCGAGTTCAAGTTCAGCCTATGTTACTTA
GTGAGACCTTGTCTCAAAACAAAGAGTCTGTTTGGTGCCACACACCTGTG
ATACACCAGTAGCTGGAAGATGAAGATAGCAGTTCAAAGCTAGCCTGGAC
TACTTGAGACTCTGTCCTCAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a19.g1 MSMg01no082_a19.g1 CHROMAT_FILE:
MSMg01no082_a19.g1 PHD_FILE: MSMg01no082_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:26 2005
         (427 letters)



>mm_chr2_167387207_167388033
          Length = 827

 Score =  774 bits (400), Expect = 0.0
 Identities = 418/426 (98%), Gaps = 4/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactggcggcaggcaggcaggcaggccggcgggcagggcagctctggcccctaggcccc 60
           ||||||||    |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 660 tcactggc----ggcaggcaggcaggccggcgggcagggcagctctggcccctaggcctc 605

                                                                       
Query: 61  catcctgccagggtgcttgctggtcctgcagctggaaatgagccttccctggctggcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 catcctgccagggtgcttgctggtcctgcagctggaaatgagccttccctggctggcaga 545

                                                                       
Query: 121 gcctcgccccccatccctgcccctcccttcacctggccctctgcccggctgtagctcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcctcgccccccatccctgcccctcccttcacctggccctctgcccggctgtagctcagg 485

                                                                       
Query: 181 aaacctgtcccttgttaaccaagtcgccagaaagaaaagaaaaagctttagcatccaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaacctgtcccttgttaaccaagtcgccagaaagaaaagaaaaagctttagcatccaccc 425

                                                                       
Query: 241 tgtttttgtccgttcatcaatctctttttttgcatttatgaacacctactgcgcgctagg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 424 tggttttgtccgttcatcaatctctttttttgcatttatgaacacctactgtgtgctagg 365

                                                                       
Query: 301 gtgggtgcagaggttgtgcgttagcacagagtcccactttcttgaccccccaggcaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgggtgcagaggttgtgcgttagcacagagtcccactttcttgaccccccaggcaggga 305

                                                                       
Query: 361 gaggagtaggaagctagtgatgaaaataggtgagatggggcacgcctatagccccagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaggagtaggaagctagtgatgaaaataggtgagatggggcacgcctatagccccagcca 245

                 
Query: 421 ctttga 426
           ||||||
Sbjct: 244 ctttga 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)