Query= MSMg01no082_d07.b1 MSMg01no082_d07.b1 CHROMAT_FILE:
MSMg01no082_d07.b1 PHD_FILE: MSMg01no082_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:37 2005
(502 letters)
>mm_chr2_143434654_143435555
Length = 902
Score = 924 bits (478), Expect = 0.0
Identities = 490/494 (99%)
Strand = Plus / Minus
Query: 6 gaattccacttctgatccttaagcagcagggatggataacaggactgagggcataatgaa 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattccacttctgattcttaagcagcagggatggataacaggactgagggcataatgaa 640
Query: 66 tccagatgtgcccatagttgagcatttcctcagaggtttggcccaaatgttactgctttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tccagatgtgcccatagttgagcatttcctcagaggtttggcccaaatgttactgctttc 580
Query: 126 ctgggatcttctgtctacttttgtctgtaggaggaagctcaaactacagtcgcctcaaga 185
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 579 ctggtatcttctgtctacttttgtctgtaggaggaagctcaaactacagtcacctcaaga 520
Query: 186 accatggagagattcacagctcatatacgcatcccccaaacaagggatgacaggggaaac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 accatggagagattcacagctcatatacgcatcccccaaacaagggatgacaggggaaac 460
Query: 246 agcagataacttctgtagagccagatggccatgaaggtaattaagatgtggcctagggga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agcagataacttctgtagagccagatggccatgaaggtaattaagatgtggcctagggga 400
Query: 306 aatcaaggtttgaattcattaaaggcattgccagttatgtgcagtgtattacagttagca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aatcaaggtttgaattcattaaaggcattgccagttatgtgcagtgtattacagttagca 340
Query: 366 caacacagggtagttggagattaagtgagccccattggttcaaaagtagtcaggagttgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caacacagggtagttggagattaagtgagccccattggttcaaaagtagtcaggagttgt 280
Query: 426 atggataggaacacgagtgtaattgccaaagacctctttgcctgttagatacatatactc 485
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atggataggaacacaagtgtaattgccaaagacctctttgcctgttagatacatatactc 220
Query: 486 ctctctgtagtaaa 499
||||||||||||||
Sbjct: 219 ctctctgtagtaaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_d07.g1 MSMg01no082_d07.g1 CHROMAT_FILE:
MSMg01no082_d07.g1 PHD_FILE: MSMg01no082_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:37 2005
(321 letters)
>mm_chr2_143276445_143277164
Length = 720
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 1 cctgggagatgatcaatttagaagagcagcttctcccagctgccccaccccctgtatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggagatgatcaatttagaagagcagcttctcccagctgccccaccccctgtatcca 260
Query: 61 actcagggctaaccaggacatggctggaatgactgtatttatacatctgtaactcccatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagggctaaccaggacatggctggaatgactgtatttatacatctgtaactcccatc 320
Query: 121 aacacaggaaataaacaaaccttattatgggttgatgggctgttgtgtttctctcaggta 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacaggagataaacaaaccttattatgggttgatgggctgttgtgtttctctcaggta 380
Query: 181 agccaatggcaatataaaattatgcttttgtttgaagttaatttctagttggctgaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaatggcaatataaaattatgcttttgtttgaagttaatttctagttggctgaattt 440
Query: 241 atgctgcctttgatatcctcctggtgctttgaatacagccagcctgcctcttcaaccttt 300
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctgcctttgaaa-cctcctggtgctttgaatacagccagcctgcctcttcaaccttt 499
Query: 301 gttttcctctagccccgagaa 321
||||||||||||||| |||||
Sbjct: 500 gttttcctctagccctgagaa 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
