BAC Information

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BAC

Clone NameMSMg01-082G07
Chromosome2 (Build37)
Map Location 174,056,735 - 174,057,161
singlet/doubletsinglet
Overlap genenone
Upstream geneTmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
Downstream geneNespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G07.T7 (MSMg01no082_g07.b1)MSMg01-082G07.TJ (MSMg01no082_g07.g1)
ACCAG302773AG302774
length690681
length of high quality
(start - end)
221 (79 - 299)428 (68 - 495)
definitionCHROMAT_FILE: MSMg01no082_g07.b1 PHD_FILE: MSMg01no082_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:51 2005CHROMAT_FILE: MSMg01no082_g07.g1 PHD_FILE: MSMg01no082_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAGGAGCCGCGGAAT
TCCCAGATTGCTGTTGTTTTTCAGTCTTCATTGTAATTCTGACGACATTG
GATTTAATAAAGACTCCAGTAACAAGATAGACAAACTCGACATCGAGAAA
ACAAGCAAGCGAAAAGCAAAATCCCCTTTATGTGTTCTTTTATGAGTATG
CCACTAGAAGGTGTGGCCAAGATTTAGGGTGAGTATTCCCACCTCAAATA
ATCTGATTTAAAACGAAAAAAAAAGGAAGCCCTCACAGCTGTGCCCAGCA
GCTTGCGTTTTAGTTGATTATAGATGTAGTCAAAGTGACACCTCCAGATT
AGCCACTCTAACACTGTGAATACAGAACAACAACCTGAAATAAATACCCT
GACGGTGCCAGAGAGAACCAGTGTCAGACTCTAGATTACACAACCGTCAC
TTATAAAGCCAGACGGTGCCGAAATGACGTACTTAAGCTCTGGAAGATAA
CTGCTAACCTAAGCTACCATGTCCAGGAAAACTGTACCACTTAAAGGAAA
AAGAAGATCACCACCAACAATCATCCCACTCTCACCCCTCTCCCTTCTCC
CCCCCTTTCCCTCATCCCTCACCCCCCCCCCCCCCCTCTCCCCCCTCCCC
CTCTCTCTTTCCCTTCCCCTCCCCCCTCTTCTTCCCCCCT
AATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTTTGGGAGGACAAACTACCAAGGCATCCAA
GTCCCTACCCCACCTTGGATTCATAGACCAGATCCCCACCATAACAGAAC
AGGACTCATTTGTAGCAAGTGACAGTGCAGGGTGAGCCATTGGGAGCAGA
AGGAAGATAAGGATTGTAAGCTGGGGTGGAAGCCAGGGCTGACAACTATC
TTTTCTTTAGAAGCCCACAAGATGCGCTTGTGATTTTCTGAGTATCACTA
AGAATCCTGAATAGTTCAGGCAAACAGTTGATCCTTTTTGACAAGTTAAT
CAGGATAGTTGATCTATTCAACATATTCAGGCCCTCTTTGAGAGGTGAAG
GGCAGGCCCCAAAGGAAAGAGCGCCAACTGTCTTCAGTGCAGAAGAACAG
CTTTCTCATTGACCAAGGTGGCCATGCTTCACTCCTCAGGCTGGATGTGG
TACTAGTACACTATGAGGTAGACCAGATAGCTCTGAGGCAATGCCTGCCA
ATATACTTTCCATGACAAGGAATTTGAAAATCACCAGTAATGGAGATTTC
TAAAGAGTGTTTTTGCTTCCGTATGTGACCATCTCTGATCGACTGAAAGG
TACATGGATGCCAAGTCAGTTTTTCCGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g07.g1 MSMg01no082_g07.g1 CHROMAT_FILE:
MSMg01no082_g07.g1 PHD_FILE: MSMg01no082_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:51 2005
         (428 letters)



>mm_chr2_174056535_174057361
          Length = 827

 Score =  789 bits (408), Expect = 0.0
 Identities = 423/428 (98%), Gaps = 1/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttttgggaggacaaactaccaaggcatccaagtccctaccccaccttggattcataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atttttgggaggacaaactaccaaggcatccaagtccctaccccaccttggattcataga 568

                                                                       
Query: 61  ccagatccccaccataacagaacaggactcatttgtagcaagtgacagtgcagggtgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccagatccccaccataacagaacaggactcatttgtagcaagtgacagtgcagggtgagc 508

                                                                       
Query: 121 cattgggagcagaaggaagataaggattgtaagctggggtggaagccagggctgacaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cattgggagcagaaggaagataaggattgtaagctggggtggaagccagggctgacaact 448

                                                                       
Query: 181 atcttttctttagaagcccacaagatgcgcttgtgattttctgagtatcactaagaatcc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 atcttttctttagaagcccacaagatgtgcttgtgattttctgagtatcactaagaatcc 388

                                                                       
Query: 241 tgaatagttcaggcaaacagttgatcctttttgacaagttaatcaggatagttgatctat 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgaa-agttcaggcaaacagttgatcctttttgacaagttaatcaggatagttgatctat 329

                                                                       
Query: 301 tcaacatattcaggccctctttgagaggtgaagggcaggccccaaaggaaagagcgccaa 360
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 328 tcaacatattcaggccctctttgagaggtgaagggcaggcagcaaaggaaagagcgccaa 269

                                                                       
Query: 361 ctgtcttcagtgcagaagaacagctttctcattgaccaaggtggccatgcttcactcctc 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagtcttcagtgcagaagaacagctttctcattgaccaaggtggccatgcttcactcctc 209

                   
Query: 421 aggctgga 428
           ||||||||
Sbjct: 208 aggctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space:   342742
Effective search space used:   342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)