BAC Information

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BAC

Clone NameMSMg01-082G08
Chromosome2 (Build37)
Map Location 45,699,235 - 45,699,591
singlet/doubletsinglet
Overlap genenone
Upstream geneGtdc1, Zeb2, LOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G08.T7 (MSMg01no082_g08.b1)MSMg01-082G08.TJ (MSMg01no082_g08.g1)
ACCAG302775AG302776
length699701
length of high quality
(start - end)
44 (371 - 414)357 (70 - 426)
definitionCHROMAT_FILE: MSMg01no082_g08.b1 PHD_FILE: MSMg01no082_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:51 2005CHROMAT_FILE: MSMg01no082_g08.g1 PHD_FILE: MSMg01no082_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGGATCCGCGGA
ATTCTATTCTTTCCCTCATCTTCTTTTAGGTTTGTTGAAGAATTACTTTC
TTGCTTTTTCTAGGGTGTCATTTCCCTCCTTGTGTTGCAGTTTTTCCTTT
ATTATTCTTTGAAGGTTTGTATTCATGGAAAGATATTGTGTGAATTTTGT
TTTATCATGGACTACTTTATTTTCTCCATTTATGGTAATTGATAGCTTTT
CTGGGTATAGTATCCTGGGCTGGAATTTGTGTTCTCTTAGGGTCTGTATA
ACATTTATCCAGGATCTTCTGTTTTTCATAGTCTCTGGTGAGAAGTCTGG
TGGAATTCTAGTAGGCCTGCCTTTATATGTTACTTGACCTTTTTTCCCTT
ACTGCTTTTAACCTCCCCTCCCTATTTAGAGCATTTGCTGTTCTGATTAT
TAAGTGTCGGGAGGAATTTCTTTTCTGGTCCAGACTATTTGGAGTCCTGT
ATTCTTCTTGTATGCTCATGTTTCATCCCTTCCTTTACGTTAGGTAAGTT
TTCCTCTATAACTCTGTTTTTCATATCTACTGTCTCTTTAATTTGAAAAT
CTTCATTCTCATCTATACCTATTATCCTTAGGTTTGGTCTTCCCTTTGCG
TTTTGTATTTCCTGCATGCTGCGACTTAAGATTTTCTTGCAGTTTCTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTCATTTATATTCAACTTTTCCAAAACAT
GACTCTTTTATTGTGGTTTTTCTGAAGAAGATGTAACTGCCAAGATATAA
GCAAGGGTAAAACAACCTTCTGGAACAAGACGAAGGTTGTTTCTTAGCAT
CAGTTGTGACATATGCAGATTTCTATATTTAAAATGAAAACATTGAAATT
ATAGCTGACAGGATTAAATATTATTTGACCCAAAATAAAAGAAATAAATT
TACCATTGTAATTTTTCAACACTGAAAGGATTGTTTCTCATCCAGAACAA
AAAAGGCCTCATTTGTTTGATATCATTTTGATGAATTATTAATTTTATCA
CAGCTAAGATGACAGCTAATATTAGAATATTGACTTATTAATTTTCAAAT
GTGCAATAAAAGCAGAATAAACATAAACTGAGATGTGTTTACGCATGGGT
TGCATTGCTTATATATTCTATTTAAGAANAATATCAAAGGAAACAGAAGG
AATTAACAATCTTGTCAACACTTCTGATTAATTCTTTTACTTTTTACTTT
TCATGCCACTTTAAAATATAATGCTCAAATAACATTATGTGTTAACAGAT
AATACATGTGATTATCGAATGCTAAAAACATGCATTATCCCCCTTCCTTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g08.g1 MSMg01no082_g08.g1 CHROMAT_FILE:
MSMg01no082_g08.g1 PHD_FILE: MSMg01no082_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:51 2005
         (357 letters)



>mm_chr2_45699035_45699791
          Length = 757

 Score =  675 bits (349), Expect = 0.0
 Identities = 355/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcatttatattcaacttttccaaaacatgactcttttattgtggtttttctgaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcatttatattcaacttttccaaaacatgactcttttattgtggtttttctgaagaa 260

                                                                       
Query: 61  gatgtaactgccaagatataagcaagggtaaaacaaccttctggaacaagacgaaggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtaactgccaagatataagcaagggtaaaacaaccttctggaacaagacgaaggttg 320

                                                                       
Query: 121 tttcttagcatcagttgtgacatatgcagatttctatatttaaaatgaaaacattgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttagcatcagttgtgacatatgcagatttctatatttaaaatgaaaacattgaaat 380

                                                                       
Query: 181 tatagctgacaggattaaatattatttgacccaaaataaaagaaataaatttaccattgt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagctgaaaggattaaatattatttgacccaaaataaaagaaataaatttaccattgt 440

                                                                       
Query: 241 aatttttcaacactgaaaggattgtttctcatccagaacaaaaaaggcctcatttgtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aatttttcaacactgaaaggattgtttctcatccagaacaaaaaaggccccatttgtttg 500

                                                                    
Query: 301 atatcattttgatgaattattaattttatcacagctaagatgacagctaatattaga 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcattttgatgaattattaattttatcacagctaagatgacagctaatattaga 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)