BAC Information

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BAC

Clone NameMSMg01-082G15
Chromosome2 (Build37)
Map Location 46,704,937 - 46,847,765
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G15.T7 (MSMg01no082_g15.b1)MSMg01-082G15.TJ (MSMg01no082_g15.g1)
ACCAG302789AG302790
length678675
length of high quality
(start - end)
417 (69 - 485)412 (63 - 474)
definitionCHROMAT_FILE: MSMg01no082_g15.b1 PHD_FILE: MSMg01no082_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:52 2005CHROMAT_FILE: MSMg01no082_g15.g1 PHD_FILE: MSMg01no082_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,847,349 - 46,847,765)(46,704,937 - 46,705,348)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATATATCTCTTTCCATGTTTGTATCATCTTTTAATAGTTCAAA
TACTCACTAGTGTAACTTTCAGAATCTTCACTGAAAATGATGAGAGAAGC
TGTTAAAAGATGCTCTGTCAGAGTTTTGCCTGGTAAGGTGTTCTCAACTG
CTTAGTGTAGCTATGACCTTCTTGCTCTATGGCTTTGTGTTGATTTCTTT
GCTCCCTGAGTAGTCCAGGAGGTTGGGTCTTTCTGCATTAATAAGTCTTG
TGCTATTTTTCCCAGTACGATGAATTGCCAGGTGATTGGGGGGTAGCAAA
AAGAACCTAGAATGCTCTGATTTTTGAGCTTGTCAGTACTATCTCCATTT
GAAGTACTCTTTGCGCATGCATGTGTGTGTGTGTGTTCCCACTGAGCAAA
GCCTACACATATATGTGTCCACATGACCTTGTGACATTTCTGCTCCTTTG
ACTGAAGTAATGTGATATGGGCACTAACACTGCCTGCCCTCCGCAACCCC
CCTTTAATATAAAGATGTCCTATACCTTCTTGCAAAGCTAGCATACCTAC
CTACCTGTCTTGATATCTCTTTTACTGCATTAATTACAATTGATTCCGCC
TTTATTTTGCCTGCCTCCTTCAGATACT
ATGAAGTGCTAGGCCTGGCGCCGCCTTTCGAAAAATGTAGGTGAACTATA
GAATTCCCGCGGAATTCAATAGTCATATTACTAACACTAAGCCTTTCAGA
ATCTAATCTAAGTATTTATCTATTTCTTCTTGGAGATGAAAGTGAGTCAA
TTTGCTTATCTTTGAATATTAAATGTTCTCCACCCCCACCCTGCTCACAC
ACATACACAATGAAGATCCTTTTTGAAACCATGCTACTGTTGAAAATACA
TCATCAAAATTCTGAGCATGCCTTCCTTTGGAAAGAAACATTTCATCATT
TTCTGAAGTACAATTGCACAATGGCATATTAAGAAGAATCCAAAACCAAC
AGAATGGAAGTTTGTTTTCCAATGGCCAGTGTATCTGGAGAACAAGGTTG
TGTTTTAATATGAGTGACTTTAGTCACTGTAGTATCATGCTGATATGTGA
AAGGCCAATTTCAGTGTTACTTTAGCCTAAATAAAATGTAAATATGTTAA
CAATACATTGATGGATCAATAATAAAATCTTAGATACCCAACACCTTGAT
AGCAAATGTCACATCGATAAGTTTATCTGAACAAATTCCACCTTTTTGTC
ACAATATTCCTCAATTTTCTGACTTGTTTTCTAATGATTCACTGTTCCCC
AGTTACCAATTTTTTTTCTCCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g15.b1 MSMg01no082_g15.b1 CHROMAT_FILE:
MSMg01no082_g15.b1 PHD_FILE: MSMg01no082_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:52 2005
         (417 letters)



>mm_chr2_46847149_46847965
          Length = 817

 Score =  768 bits (397), Expect = 0.0
 Identities = 412/417 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatgtttgtatcatcttttaatagttcaaatactcactagtgtaactttcagaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccatgtttgtatcatcttttaatagttcaaatactcactagtgtaactttcagaatctt 558

                                                                       
Query: 61  cactgaaaatgatgagagaagctgttaaaagatgctctgtcagagttttgcctggtaagg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cactgaaaatgacgagagaagctgttaaaagatgctctgtcagagttttgcctggtaagg 498

                                                                       
Query: 121 tgttctcaactgcttagtgtagctatgaccttcttgctctatggctttgtgttgatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgttctcaactgcttagtgtagctatgaccttcttgctctatggctttgtgttgatttct 438

                                                                       
Query: 181 ttgctccctgagtagtccaggaggttgggtctttctgcattaataagtcttgtgctattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgctccctgagtagtccaggaggttgggtctttctgcattaataagtcttgtgctattt 378

                                                                       
Query: 241 ttcccagtacgatgaattgccaggtgattggggggtagcaaaaagaacctagaatgctct 300
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 377 ttcccagtaggatgaattgccaggtgattggtgggtagcaaaaagaacctagaatgctct 318

                                                                       
Query: 301 gatttttgagcttgtcagtactatctccatttgaagtactctttgcgcatgcatgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 317 gatttttgagcttgtcagtactatctccatttgaagtactctttgtgcatgaatgtgtgt 258

                                                                    
Query: 361 gtgtgtgttcccactgagcaaagcctacacatatatgtgtccacatgaccttgtgac 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtgtgtgttcccactgagcaaagcctacacatatatgtgtccacatgaccttgtgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no082_g15.g1 MSMg01no082_g15.g1 CHROMAT_FILE:
MSMg01no082_g15.g1 PHD_FILE: MSMg01no082_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:52 2005
         (412 letters)



>mm_chr2_46704737_46705548
          Length = 812

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcaatagtcatattactaacactaagcctttcagaatctaatctaagtatttatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcaatagtcatattactaacactaagcctttcagaatctaatctaagtatttatcta 260

                                                                       
Query: 61  tttcttcttggagatgaaagtgagtcaatttgcttatctttgaatattaaatgttctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcttcttggagatgaaagtgagtcaatttgcttatctttgaatattaaatgttctcca 320

                                                                       
Query: 121 cccccaccctgctcacacacatacacaatgaagatcctttttgaaaccatgctactgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccccaccctgctcacacacatacacaatgaagatcctttttgaaaccatgctactgttg 380

                                                                       
Query: 181 aaaatacatcatcaaaattctgagcatgccttcctttggaaagaaacatttcatcatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatacatcatcaaaattctgagcatgccttcctttggaaagaaacatttcatcatttt 440

                                                                       
Query: 241 ctgaagtacaattgcacaatggcatattaagaagaatccaaaaccaacagaatggaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaagtacaattgcacaatggcatattaagaagaatccaaaaccaacagaatggaagtt 500

                                                                       
Query: 301 tgttttccaatggccagtgtatctggagaacaaggttgtgttttaatatgagtgacttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttttccaatggccagtgtatctggagaacaaggttgtgttttaatatgagtgacttta 560

                                                               
Query: 361 gtcactgtagtatcatgctgatatgtgaaaggccaatttcagtgttacttta 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcactgtagtatcatgctgatatgtgaaaggccaatttcagtgttacttta 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)