BAC Information

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BAC

Clone NameMSMg01-082J01
Chromosome2 (Build37)
Map Location 155,214,865 - 155,363,051
singlet/doubletdoublet
Overlap geneTrp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
Upstream geneSnta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
Downstream geneGss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082J01.T7 (MSMg01no082_j01.b1)MSMg01-082J01.TJ (MSMg01no082_j01.g1)
ACCAG302903AG302904
length704694
length of high quality
(start - end)		409 (44 - 452)562 (75 - 636)
definitionCHROMAT_FILE: MSMg01no082_j01.b1 PHD_FILE: MSMg01no082_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:03 2005CHROMAT_FILE: MSMg01no082_j01.g1 PHD_FILE: MSMg01no082_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,214,865 - 155,215,268)(155,362,490 - 155,363,051)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCACAAAGTCCTATGCAACCCTAGACAGGAGGAGGTTAGAGAGTCTGT
CTTGATTTGTGGTTTCAGAGACCCTAGAGAAATTTGTACCAGTTTGTATT
AAAGTCAGTACTACCAGCACTTTGCCAAAACTACGGATGTCAGAGGGACC
TGTTTCTAGAGTGAGTCCCAATTACATCAAAGGGCAACCTGCGCTTTCTC
CAATAAGTCTGAGTGGTTCTCTTGAGCTGGTGTCACTTTCTAACCTTTGC
CAGTCTAGCCCCAGCAGGGCACCGTGTGTGTGAGTGTGGTTTGGTGCTGT
TTTGGAGTGTGCCTGCCCCCCAGCCTGGAACCCTCTGATCAACTTGCTGG
GACCTATAACGTCTTAGGTGCAACAAGGACCCTACCATAGCTCCTGGGTG
GCTTTGTGCGAGGGGACTGAACGCAGACTACCCACAGCCTGCTTCTAATA
CCTTCTTTCCCTACCACCTAGTTCCCAATGGAACCAACAAGTCGAGCGCA
TCTCTGTTGCGTGTTTCGTGTCTTCGCCGTTTTGATCTCTCATCCCTTTT
GACTTGACCATGTTGTGATGCCGCCCATCGATTTCATGGCCTCCCCCGCC
TTCGTACCTGTCTCCTGGGTGTTAGGCCCTGTCGTATGGGTCGTTTTCCG
CCCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGCAAGCATGAAGCATAAACACAC
ATCTGTTTGGGGACATCTGCCTAACACTTGTCTTCCTTAGTGTCTCACTG
ACTGTGATCCTGCACATACAAACTTCTATTGCACTTGTATGGGTCTAACT
TTTCCTATTACACCTAGAGGGCAAGAGTCATGTTCTTTCTCTGCCTCTTC
CAAATAAGGCCAGAATAATCAGGTACTCAAGAATATGGGCAAATCAGGAG
AGAGAAGACTGATAAGTGATTAACAGAGAAGACAGAGATCCTCTCTTTCT
ACTAGAAGGATAAGGACCAGATTGATGATTTTAATTTCTCACAACTACAA
GTAAAGCATAAAATAGGACCAAAGAACTGGGAAGAAGATGGGTGGTAGGC
CTGGGTACTTGCCCAGCATGCTCTAAGATCTCCAATACTTTGCCTTCCAA
TAAAAGATGAATGGAGGGTTGGAGAGATGACTCAGTGGTTAAGAGCACCG
ACTACTCTTCCAGAAGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGC
TCACAGCCATCTGTAATGAGCACTCAATGCCGTTTTCTACTCTGTCTGAA
GACAGTATATGAAATACATATGGCCGGAGCGAGGCCAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_j01.b1 MSMg01no082_j01.b1 CHROMAT_FILE:
MSMg01no082_j01.b1 PHD_FILE: MSMg01no082_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:03 2005
         (409 letters)



>mm_chr2_155214660_155215468
          Length = 809

 Score =  774 bits (400), Expect = 0.0
 Identities = 403/404 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcacaaagtcctatgcaaccctagacaggaggaggttagagagtctgtcttgattt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacaaagtcctatgcaaccctagacaggaggaggttagagagtctgtcttgattt 265

                                                                       
Query: 66  gtggtttcagagaccctagagaaatttgtaccagtttgtattaaagtcagtactaccagc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtggtttcagagaccctagagaaatttgtaccagtttgtattaaagtcagtactaccagc 325

                                                                       
Query: 126 actttgccaaaactacggatgtcagagggacctgtttctagagtgagtcccaattacatc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actttgccaaaactacggatgtcagagggacctgtttctagagtgagtcccaattacatc 385

                                                                       
Query: 186 aaagggcaacctgcgctttctccaataagtctgagtggttctcttgagctggtgtcactt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaagggcaacctgcgctttctccaataagtctgagtggttctcttgagctggtgtcactt 445

                                                                       
Query: 246 tctaacctttgccagtctagccccagcagggcaccgtgtgtgtgagtgtggtttggtgct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctaacctttgccagtctagccccagcagggcaccgtgtgtgtgagtgtggtttggtgct 505

                                                                       
Query: 306 gttttggagtgtgcctgccccccagcctggaaccctctgatcaacttgctgggacctata 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttttggagtgtgcctgccccccagcctggaaccctctgatcaacttgctgggacctata 565

                                                       
Query: 366 acgtcttaggtgcaacaaggaccctaccatagctcctgggtggc 409
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 566 acgtcttaggtgcaacaaggaccctaccagagctcctgggtggc 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no082_j01.g1 MSMg01no082_j01.g1 CHROMAT_FILE:
MSMg01no082_j01.g1 PHD_FILE: MSMg01no082_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:03 2005
         (562 letters)



>mm_chr2_155362411_155363372
          Length = 962

 Score = 1087 bits (562), Expect = 0.0
 Identities = 562/562 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcaagcatgaagcataaacacacatctgtttggggacatctgcctaacacttgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 actgcaagcatgaagcataaacacacatctgtttggggacatctgcctaacacttgtctt 582

                                                                       
Query: 61  ccttagtgtctcactgactgtgatcctgcacatacaaacttctattgcacttgtatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ccttagtgtctcactgactgtgatcctgcacatacaaacttctattgcacttgtatgggt 522

                                                                       
Query: 121 ctaacttttcctattacacctagagggcaagagtcatgttctttctctgcctcttccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctaacttttcctattacacctagagggcaagagtcatgttctttctctgcctcttccaaa 462

                                                                       
Query: 181 taaggccagaataatcaggtactcaagaatatgggcaaatcaggagagagaagactgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taaggccagaataatcaggtactcaagaatatgggcaaatcaggagagagaagactgata 402

                                                                       
Query: 241 agtgattaacagagaagacagagatcctctctttctactagaaggataaggaccagattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agtgattaacagagaagacagagatcctctctttctactagaaggataaggaccagattg 342

                                                                       
Query: 301 atgattttaatttctcacaactacaagtaaagcataaaataggaccaaagaactgggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atgattttaatttctcacaactacaagtaaagcataaaataggaccaaagaactgggaag 282

                                                                       
Query: 361 aagatgggtggtaggcctgggtacttgcccagcatgctctaagatctccaatactttgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagatgggtggtaggcctgggtacttgcccagcatgctctaagatctccaatactttgcc 222

                                                                       
Query: 421 ttccaataaaagatgaatggagggttggagagatgactcagtggttaagagcaccgacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttccaataaaagatgaatggagggttggagagatgactcagtggttaagagcaccgacta 162

                                                                       
Query: 481 ctcttccagaagtcctgagttcaattcccagcaaccacatagtggctcacagccatctgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctcttccagaagtcctgagttcaattcccagcaaccacatagtggctcacagccatctgt 102

                                 
Query: 541 aatgagcactcaatgccgtttt 562
           ||||||||||||||||||||||
Sbjct: 101 aatgagcactcaatgccgtttt 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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