BAC Information

Click to search

BAC

Clone NameMSMg01-082P19
Chromosome2 (Build37)
Map Location 90,982,945 - 90,983,426
singlet/doubletsinglet
Overlap geneMadd
Upstream geneLOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3
Downstream geneNr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082P19.T7 (MSMg01no082_p19.b1)MSMg01-082P19.TJ (MSMg01no082_p19.g1)
ACCAG303226AG303227
length710715
length of high quality
(start - end)
595 (36 - 630)443 (64 - 506)
definitionCHROMAT_FILE: MSMg01no082_p19.b1 PHD_FILE: MSMg01no082_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:35 2005CHROMAT_FILE: MSMg01no082_p19.g1 PHD_FILE: MSMg01no082_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCAC
TGGTTACCTACAATTCCAAAATCCACAGCTAGAGCCAGAGCTGGCCTCTA
GCTCTCATGTGGAATGCTCACCCTGGCTCTGAGACAGTAGTAGCCTTTGG
AAGCTCTAGAGCAGGGGAAATGGCAGCTTGGCAGGGCTCCTGTCAAAAGT
CCACCCCTCCCTGTGCTGCAGTGTCGAGAGCTGTACTACTGTGTGAAGGA
CAGCATGGAACGTGCTGCTGCCCGACAGCAAAGCATCAAACCTGGTGAGG
AGCAGACCCTTCACGCACCCCTCACACACCCCTACCCCCACCCCCACGCC
GTAGCCCCCTCCTCACCACAGACCCCCTCAGAAAGTTGGGCTGTGGGATT
TGCACCTCACAGGTCAGCTGACGCCTTCCTTTCACCACAGGGCCTGAGCT
AGGCGGTGAGTTCCCTGTGCAGGACATGAAGACTGGAGAGGGTGGCTTGC
TTCAAGTCACCCTGGAAGGGATCAATCTCAAGTTCATGCACAACCAGGTA
TGCACAAGCGGCAGCAGGCGGCCTCCGGCCCTAGTGTTTTGCTACGTAAG
ATCAGTTTCCAGGCTCTCCGTGCTCTCCCAGTGAGTAAGAGGGAGAGCCT
TAGGCCAGAGAGAGGTGAATGTCTAGACAGAGAGAAACCTAGGGGAGGGC
ACATTGACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTAAGACCTACCTGCCTCTGCCTCCTGAGTGCTGGGA
CTCAGGCGTTTGCCACCACACCTGGATTTGAAATATATTTAGAGTCAGAA
ACCAATCGGGCAAGTTGTTCTGTGGGGTTTTTTTTTTTTTTTGTTTTTTG
TTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGG
AACTCACCCTGTAGCCCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT
CTGCCTCCTGAGTGTTGTGACTAAAGGCGTGCGGCACCAATGCCTGGCTG
TTCTGTGTTTTTATAGTCTGCTTAGGTGTTTTCATCTTTGTTTAAAGATG
GGTACATTTAGACTGGATATGCTATTATATGCCTGAAATTCTAGTACATG
GAATGCTGAGGCAGGAGGGTAAGGAATTGGAGGCCAGCCAATGTGAAAAC
CCCCTAAGGAATACAAAAATTAAAGTAGGTACACTTGTTTATTTTTTTAA
AAATAGGTTAGAGGACAATTTAAATCAGGTAATTATTACTTACAATTGTT
GACTGATGTAGGGCCTTTAGGTTCAGCTTTGATTGTCCCATCATTCATTA
TGTAAGTCATCTTTGATCCTGGGTGTATTAGTAAGTGTTTCAGCTTTTAC
CCCGTGTCTTCTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_p19.b1 MSMg01no082_p19.b1 CHROMAT_FILE:
MSMg01no082_p19.b1 PHD_FILE: MSMg01no082_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:35 2005
         (595 letters)



>mm_chr2_90982945_90983939
          Length = 995

 Score =  828 bits (428), Expect = 0.0
 Identities = 466/486 (95%), Gaps = 14/486 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcactg----gttacctacaattccaaaatccacagctagagccagagctggc 60
           |||||||||||||    ||    |||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattcctcactgggaagt----tacaattccaaaatccacagctagagccagagctggc 427

                                                                       
Query: 61  ctctagctctcatgtggaatgctcaccctggctctgagacagtagtagcctttggaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctctagctctcatgtggaatgctcaccctggctctgagacagtagtagcctttggaagct 367

                                                                       
Query: 121 ctagagcaggggaaatggcagcttggcagggctcctgtcaaaagtccacccctccctgtg 180
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 366 ctagaacaggggaaatggcagcttggcagggctcctgtcacaagtccacccctccctgtg 307

                                                                       
Query: 181 ctgcagtgtcgagagctgtactactgtgtgaaggacagcatggaacgtgctgctgcccga 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctacagtgtcgagagctgtactactgtgtgaaggacagcatggaacgtgctgctgcccga 247

                                                                       
Query: 241 cagcaaagcatcaaacctggtgaggagcagacccttcacgcacccctcacacacccct-- 298
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  
Sbjct: 246 cagcaaagcatcaaacctggtgaggaacagacccttcacgcacccctcacacacccctac 187

                                                                       
Query: 299 ----acccccacccccacgccgtagccccctcctcaccacagaccccctcagaaagttgg 354
               |||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 186 ccccacccccacccccacgccgtagccccctcctcaccacagacctgctcagaaagttgg 127

                                                                       
Query: 355 gctgtgggatttgcacctcacaggtcagctgacgccttcctttcaccacagggcctgagc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gctgtgggatttgcacctcacaggtcagctgacgccttcctttcaccacagggcctgagc 67

                                                                       
Query: 415 taggcggtgagttccctgtgcaggacatgaagactggagagggtggcttgcttcaagtca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  taggcggtgagttccctgtgcaggacatgaagactggagagggtggcttgcttcaagtca 7

                 
Query: 475 ccctgg 480
           ||||||
Sbjct: 6   ccctgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)