Query= MSMg01no083_a11.b1 MSMg01no083_a11.b1 CHROMAT_FILE:
MSMg01no083_a11.b1 PHD_FILE: MSMg01no083_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:38 2005
(367 letters)
>mm_chr2_112250725_112251493
Length = 769
Score = 683 bits (353), Expect = 0.0
Identities = 362/365 (99%), Gaps = 2/365 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttttgactcactacttttactctgattactctgacatagtgagttttttttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttttgactcactacttttactctgattactctgacatagtgagttttttttt 264
Query: 65 -aatgttttgggttatagtcacacttttttcaaattcatctaacatccttctgaatctct 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatgttttgggttatagtcacacttttttcaaattcatctaacatccttctgaatctct 324
Query: 124 cattcagactaaagtcttataaacagttctatttttctgaggttgtttgttgcttgtgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattcagactaaagtcttataaacagttctatttttctgaggttgtttgttgcttgtgat 384
Query: 184 tttaaagtatacataacactgtgaagactttagtagagctgaaaagcattgtttgcctaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tttaaagtatacataacactgtgaagactttagtagagctgaaaagcattttttgcctaa 444
Query: 244 aattttgattttttttttt-aatgttaggttattgggacaggtctgtatagtcagggcta 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattttgattttttttttttaatgttaggttattgggacaggtctgtatagtcagggcta 504
Query: 303 tcctcgtgtcactgtgaagcccctcctggtgctgaaatcaccatcttctttcctcagctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctcgtgtcactgtgaagcccctcctggtgctgaaatcaccatcttctttcctcagctc 564
Query: 363 ccaag 367
|||||
Sbjct: 565 ccaag 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 769
Length adjustment: 9
Effective length of query: 358
Effective length of database: 760
Effective search space: 272080
Effective search space used: 272080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_a11.g1 MSMg01no083_a11.g1 CHROMAT_FILE:
MSMg01no083_a11.g1 PHD_FILE: MSMg01no083_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:38 2005
(478 letters)
>mm_chr2_112383387_112384264
Length = 878
Score = 787 bits (407), Expect = 0.0
Identities = 428/435 (98%)
Strand = Plus / Minus
Query: 44 aaaaaaaaagaaatttctttctgtaagatttatttattattataaataagttcactgtag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 aaaaaaaaagaaatttctttctgtaagatttatttattattataaataagttcactgtag 819
Query: 104 ctatcttcagatgcaccagaagagggcatcagatttcattacaggtggttgtgagccacc 163
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 818 ctatcttcagatgcaccagaagagggcgtcagatttcattacaggtggttgtgagccacc 759
Query: 164 atgtggttgctgggatttgaactcaggaccttgggaagagcagtcagtgctcttacctgc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atgtggttgctgggatttgaactcaggaccttgggaagagcagtcagtgctcttacctgc 699
Query: 224 tgagccatcacaccagccccagaaaggaattcctatcatactgtgtatgtcttcagaccc 283
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 698 tgagccatcacaccagccccagaaaggaattcctatcacactgtgtatgtcttcagaccc 639
Query: 284 catcatatattctctgcaaatgcataaatcccaacaaggcatgccatcctgagatcaagg 343
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 638 catcatatattctctgcaaatgcataaatccggacaaggcatgccatcctgagatcaagg 579
Query: 344 cgatggcaagcagacgctgctgagtcccagcattgcttgctctgttgtctgaggatcagg 403
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cgacggcaagcagacgctgctgagtcccagcattgcttgctctgttgtctgaggatcagg 519
Query: 404 cattcccaccaggtgagttgttcttcgtccaccctgtttccagagccttgatttgatttc 463
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 518 cattcccaccaggtgagctgttcttcgtccaccctgtctccagagccttgatttgatttc 459
Query: 464 ctcatgttaaaagga 478
|||||||||||||||
Sbjct: 458 ctcatgttaaaagga 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
