CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TCAACTAAAGAAACTCGAATGGCAGAAAAGACCTAAAGCAACATCCTTAG
TCATCAGGGAAATGCAAGTAAAAACATCCCTGAGATTCTACCTCACACCA
GTCAGAATACTAAGTTAAAAATCTCAGGTGACAACAGATCTGTAGAAAGA
AGATCACTCCTCCATTGCTGGTGGTATTGCAAAGTGGTACAACCAGTCTG
GAAATCAGTCTGAAGTTTCCTCAGAAAACTGAACATAGTACTACTTGAGG
ACCCAGCAATACCACTCCTGGGCATATACCCAAAAGAAGTCCCAACATAC
AACAAGTCCACATTCCCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGATCTCAGATGTCTCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATATAGACAATGGAGTATTACTTGATGTGTTTATGACAA
GATAAAGAGATAAGGGATATGTTCTATGGGGGTGTGGTGAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNTNNTTNTTTNTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTCCCTTTTTTTTTTTTTTTTTTTTTNCTTTTTTTCTTC
CCCTTTCCN

ATGCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTCTTTTTGAATTTGTACCTGCTGATT
TGCAATTACAAAAATGATGCTGTTATAGACCAGTGTATCTTTGAAATCAT
CAGTCTTAACTAAACCCTATGTTCAGTGTTAAGAACCCTACAGTCTTTAG
GCTGCATCAAGCTGTGCAGTGAAGTTTGGTGGAAAGAAGTTACAGTAAAG
ATGGCTATATACCCTGCTAGCTGCTCCTTCTTGTTAGTTTAGTGTCAATA
TTGGTCCACATTATTTTTTATATGTGGCCACATCTTTTTCTAATCTAATT
ATTGACAGCTTCTCTTATTGGTGACACATACAAGAGGACAGACTGGATGA
CAGCCTGATTAAAGATTTTGAGAAATGGTGCAGACAGGTACACATTTGGA
AGTAACTGTGGATATTTAAAATTGACAAATTCATTCTTAACATACTCACT
ACTACTTTTTAAATGACCACTAAGATTCTGAAGATATAACTAGGTTTTTT
GCGTTTTGTTGCTTAATGAGTAGAATATATAGATAATGTTAATGATAACA
GTACTATAATTTGGGCCAAGAGACATAAAAATTAGCATTTACACAGTAAG
GATGGCTAGTGTGATACGTGAGTAACTCTTGCACTAATCAATTTAACCCT
TTCCAA

Query= MSMg01no083_c04.g1 MSMg01no083_c04.g1 CHROMAT_FILE:
MSMg01no083_c04.g1 PHD_FILE: MSMg01no083_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:47 2005
         (546 letters)



>mm_chr2_55350911_55351856
          Length = 946

 Score =  994 bits (514), Expect = 0.0
 Identities = 538/546 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctttttgaatttgtacctgctgatttgcaattacaaaaatgatgctgttatagacca 60
           ||||| ||||||||||||||||||||||||| | |||||||||||| |||||||| ||||
Sbjct: 746 cctctctttgaatttgtacctgctgatttgcgactacaaaaatgatactgttataaacca 687

                                                                       
Query: 61  gtgtatctttgaaatcatcagtcttaactaaaccctatgttcagtgttaagaaccctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtgtatctttgaaatcatcagtcttaactaaaccctatgttcagtgttaagaaccctaca 627

                                                                       
Query: 121 gtctttaggctgcatcaagctgtgcagtgaagtttggtggaaagaagttacagtaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtctttaggctgcatcaagctgtgcagtgaagtttggtggaaagaagttacagtaaagat 567

                                                                       
Query: 181 ggctatataccctgctagctgctccttcttgttagtttagtgtcaatattggtccacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 566 ggctatataccctgctagctgctccttcttgttagtttagtgtcaatattggttcacatt 507

                                                                       
Query: 241 attttttatatgtggccacatctttttctaatctaattattgacagcttctcttattggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attttttatatgtggccacatctttttctaatctaattattgacagcttctcttattggt 447

                                                                       
Query: 301 gacacatacaagaggacagactggatgacagcctgattaaagattttgagaaatggtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 gacacatacaagaggacagactggatgacagcctgattaaagattttgaaaaatggtgca 387

                                                                       
Query: 361 gacaggtacacatttggaagtaactgtggatatttaaaattgacaaattcattcttaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gacaggtacacatttggaagtaactgtggatatttaaaattgacaaattcattcttaaca 327

                                                                       
Query: 421 tactcactactactttttaaatgaccactaagattctgaagatataactaggttttttgc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacgcactactactttttaaatgaccactaagattctgaagatataactaggttttttgc 267

                                                                       
Query: 481 gttttgttgcttaatgagtagaatatatagataatgttaatgataacagtactataattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttttgttgcttaatgagtagaatatatagataatgttaatgataacagtactataattt 207

                 
Query: 541 gggcca 546
           ||||||
Sbjct: 206 gggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)