Query= MSMg01no083_f11.b1 MSMg01no083_f11.b1 CHROMAT_FILE:
MSMg01no083_f11.b1 PHD_FILE: MSMg01no083_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:02 2005
(604 letters)
>mm_chr2_60778314_60779320
Length = 1007
Score = 1110 bits (574), Expect = 0.0
Identities = 596/604 (98%), Gaps = 3/604 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacatcaacgttctgcattcctgtttatgttaagagttccaagaatgatcacg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacatcaaggttctgcattcctgtttatgttaagagttccaagaatgatcacg 263
Query: 64 tgtgcacgctggccccccttgggcagggctagcatgaaaggccgttcaaccacgttgttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgcacgctggccccccttgggcagggctagcatgaaaggccgttcaaccacgttgttt 323
Query: 124 aattgtatatagtccagcactaggcaactctccaaaccttattgtaaacattgtgcaagg 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 aattgtatatagtccagcactaggcaactctccaaaccttactgtaaacattgtgcaagg 383
Query: 184 tctgtgagttctgctacacaatggagttcgggctttgtacagttaacttcaagtggcagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgtgagttctgctacacaatggagttcgggctttgtacagttaacttcaagtggcagt 443
Query: 244 tcacttctcttcagggttttagaccccgttcgccatcaccagtacacactgctttgccac 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 tcacttctcttcagggttttagaccccgttagccatcaccagtacacactgctttgccac 503
Query: 304 aaaccagctggcatttaggaactcagaaacttagaaattgatgctctgctccaagggtat 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaccagctggcatttaggaaatcagaaacttagaaattgatgctctgctccaagggtat 563
Query: 364 cattcccccc-atcccccacacc--aagtgcaccgacttggcacaggatttagggtttag 420
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 cattcccccccatcccccacaccccaagtgcaccgacttggcacaggatttagggtttag 623
Query: 421 tttcaaagctaaaggggaaggcaatctatcacagattctcgtgttaaggttggaaacaga 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 tttcaaagctaaaggggaaggcaatctatcacagattctcctgttaaggttggaaacaga 683
Query: 481 acagagccgaatgaggaattctgaacactggccgcccaagatggaattaagtgtactggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagagccgaatgaggaattctgaacactggccgcccaagatggaattaagtgtactggc 743
Query: 541 tataatgtcagagcaacctcaagattttgttaatttgatggaactattattttaaactgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tataatgtcagagcaacctcaagattttgttaatttgatggaactattattttaaactgt 803
Query: 601 tcaa 604
||||
Sbjct: 804 tcaa 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1007
Length adjustment: 10
Effective length of query: 594
Effective length of database: 997
Effective search space: 592218
Effective search space used: 592218
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_f11.g1 MSMg01no083_f11.g1 CHROMAT_FILE:
MSMg01no083_f11.g1 PHD_FILE: MSMg01no083_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:02 2005
(531 letters)
>mm_chr2_60839968_60840898
Length = 931
Score = 1011 bits (523), Expect = 0.0
Identities = 529/531 (99%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 1 cagagacagaatggtcaacacaataaccctggagaagtgtaagctttttaaaatgtttgc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 cagagatagaatggtcaacacaataaccctggagaagtgtaagctttttaaaatgtttgc 859
Query: 61 catacccaagtaattaactatagaccaattgatgacaattcttacactatcaataatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 catacccaagtaattaactatagaccaattgatgacaattcttacactatcaataatgat 799
Query: 121 cattattttatttgacacaaaaatctgtgaaattgattctaaaaagaaattaaaggcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cattattttatttgacacaaaaatctgtgaaattgattctaaaaagaaattaaaggcaat 739
Query: 181 atttatagatctccacaactaaactttgtaatatataaatacatatttatatgtaaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atttatagatctccacaactaaactttgtaatatataaatacatatttatatgtaaatta 679
Query: 241 tatataaatatattatatataaaattgatattataaaattcaatgcaacatctctttccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tatataaatatattatatataaaattgatattataaaattcaatgcaacatctctttccc 619
Query: 301 tgtccttcactctgattctccacttgctacttttcagttagccatagtgagaacagccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtccttcactctgattctccacttgctacttttcagttagccatagtgagaacagccac 559
Query: 361 tgcctaactctctccatggctggtggggctgctcctgtatgcataccttcctcatcatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgcctaactctctccatggctggtggggctgctcctgtatgcataccttcctcatcatgg 499
Query: 421 taggtggaaacttgagaaaccagaactaaaacatgccttcctttactttttttttaatta 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 taggtggaaacttgagaaaccagaactaaaacatgccttcctttac-ttttttttaatta 440
Query: 481 ggtattttcctcatttacatttacaatgctatcacaaaagtcccccatacc 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggtattttcctcatttacatttacaatgctatcacaaaagtcccccatacc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
