BAC Information

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BAC

Clone NameMSMg01-083I17
Chromosome2 (Build37)
Map Location 35,656,108 - 35,738,491
singlet/doubletdoublet
Overlap geneTtll11
Upstream geneFbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083I17.T7 (MSMg01no083_i17.b1)MSMg01-083I17.TJ (MSMg01no083_i17.g1)
ACCAG303637AG303638
length681689
length of high quality
(start - end)
186 (418 - 603)484 (72 - 555)
definitionCHROMAT_FILE: MSMg01no083_i17.b1 PHD_FILE: MSMg01no083_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:18 2005CHROMAT_FILE: MSMg01no083_i17.g1 PHD_FILE: MSMg01no083_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,656,108 - 35,656,293)(35,738,008 - 35,738,491)
sequence
AGAATTTGCGGCGCTAAACGACTCCTAATCGTTATGGGGGCGGAATCATT
TTCTTACAGAAACAAGGAGAAACACCCATCTCTATTTTGTCTGGAGACCT
CACTGCTTAAAAACAATCACCACCAATGACTAGGGAGCCTTCTACATGTC
AATAATTGAGCTAACCAATTTACCTCAGTAATCCCATTTGTTTCCAATAA
CAGGTCTCTGAAGTAGGCTAGCCCCCCCCCCCCACACACACAGTTTTTGC
CAGGTGACACTTGTCCAAGTCACTAGATCAGCTGAGGGATTAGCATTGAC
CATGGGGCTGCACTCGCCTTGCCCAAGCTGAACTCACTATACAGCCCTTA
TGCTCATTTGCACTTAAATCAAACCAGAGACTTTTCTCCTTCTGTATAAG
CCATACACAGTCCGGGAGATAAACAAAAGTGGGAAAATATATATGGCAAG
ATCAAATCCTAGCTACATAGGAGTTGCTCAAATTCTCCCCAGAGGAATAA
TTCCCATCTCTTGTTAGTACACCTTCAATCAGTTCCCATTTTTAAGGATT
TCCTACACACTGGTATGTCCCAGGTGCCTTGGATGTACAGGTGGGGTGCA
CAGAGTTCCTGCTGCCATAGACATGTGTCTGAATCGGGACAGGGAATTTA
TTGTTTTGTACGAGAATTGAACCACACTGGT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATGCTGAACCCCAAGGACCAGCATAC
ACAGATCCATGTGTCATCGAATTAAAAAAGTCGGGGTCAAAGTAAGGTGA
CTGTTCATATGTTCATTTGCATTTCATTTGCATCAGAGGTGCATTAGAGA
AACAAGATTCCTTTATCTTGAGTGTTTGTTGAGCACTTACTGTGTGTCAA
GAGGAGGACTCCAGAAGCAAATTAGCTCACAGGCCAGAAGGGGAGGTGAG
ACCCATACATAACGATCTGCAAGGTGGAGCAGGCTAAGTACGGTGGATGC
AAGGAGAAATCGTCAAGAAGGAAGAGCCTATGGAGGCAGCATTTCCTGAC
AGGAAGAACTTCTAACGCAGGTAAAGAGGCAGCGCTGCAGCTGAGGTGTA
AGTGAGTAGGGCTTGAAATACAAAGACAAGAGGAAGGATGTCCCTGGGGG
AGGAAGCAGCCGCAGGAGGCTCCGCGGTGAGTTCTGAAGAGTTCAGGGAG
GCTGGAGAGGCAGGTGCAGGAAGTATGGTGAAGAGAGGAGGGAGGCAGAA
GGATATAACTTTTTTTCTCTATCTCTTTCATCTCTAATACTTGTCTGTCT
TCGTTTTTATCAGTTTCCTTTTACTTTCTTTCGCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_i17.b1 MSMg01no083_i17.b1 CHROMAT_FILE:
MSMg01no083_i17.b1 PHD_FILE: MSMg01no083_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:18 2005
         (186 letters)



>mm_chr2_35655908_35656493
          Length = 586

 Score =  321 bits (166), Expect = 2e-92
 Identities = 181/186 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataaacaaaagtgggaaaatatatatggcaagatcaaatcctagctacataggagttgc 60
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 201 gataaacaaaagtgggaaaatatatatggcaagaccaaatcctagcttcataggagttgc 260

                                                                       
Query: 61  tcaaattctccccagaggaataattcccatctcttgttagtacaccttcaatcagttccc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaattttccccagaggaataattcccatctcttgttagtacaccttcaatcagttccc 320

                                                                       
Query: 121 atttttaaggatttcctacacactggtatgtcccaggtgccttggatgtacaggtggggt 180
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 atttttgaggatttcctacacactggtatgtcccaggtgcctcggatgtacaggtggggt 380

                 
Query: 181 gcacag 186
           ||||||
Sbjct: 381 gcacag 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no083_i17.g1 MSMg01no083_i17.g1 CHROMAT_FILE:
MSMg01no083_i17.g1 PHD_FILE: MSMg01no083_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:18 2005
         (484 letters)



>mm_chr2_35737808_35738691
          Length = 884

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgctgaaccccaaggaccagcatacacagatccatgtgtcatcgaattaaaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttatgctgaaccccaaggaccagcatacacagatccatgtgtcatcgaattaaaaaagt 625

                                                                       
Query: 61  cggggtcaaagtaaggtgactgttcatatgttcatttgcatttcatttgcatcagaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 cggggtcaaagtaaggtgactgttcatatgttcatttgcatttcatttgcatcaggggtg 565

                                                                       
Query: 121 cattagagaaacaagattcctttatcttgagtgtttgttgagcacttactgtgtgtcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cattagagaaacaagattcctttatcttgagtgtttgttgagcacttactgtgtgtcaag 505

                                                                       
Query: 181 aggaggactccagaagcaaattagctcacaggccagaaggggaggtgagacccatacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggaggactccagaagcaaattagctcacaggccagaaggggaggtgagacccatacata 445

                                                                       
Query: 241 acgatctgcaaggtggagcaggctaagtacggtggatgcaaggagaaatcgtcaagaagg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 acgatctgcaaggtggagcaggctaagtacagtggatgcaaggagaaatcgtcaagaagg 385

                                                                       
Query: 301 aagagcctatggaggcagcatttcctgacaggaagaacttctaacgcaggtaaagaggca 360
           ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 384 aagagcctatggaggcagcatttcctggcaggaagaacttctaaagcaggtgaagaggca 325

                                                                       
Query: 361 gcgctgcagctgaggtgtaagtgagtagggcttgaaatacaaagacaagaggaaggatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcgctgcagctgaggtgtaagtgagtagggcttgaaatacaaagacaagaggaaggatgt 265

                                                                       
Query: 421 ccctgggggaggaagcagccgcaggaggctccgcggtgagttctgaagagttcagggagg 480
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 264 ccctgggggaggaagcagccgcaggaggctccgcggggagttctgaagagttcaaggagg 205

               
Query: 481 ctgg 484
           ||||
Sbjct: 204 ctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)