BAC Information

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BAC

Clone NameMSMg01-083N19
Chromosome2 (Build37)
Map Location 127,628,112 - 127,628,591
singlet/doubletsinglet
Overlap geneBub1
Upstream geneTrpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik
Downstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N19.T7 (MSMg01no083_n19.b1)MSMg01-083N19.TJ (MSMg01no083_n19.g1)
ACCAG303870AG303871
length724721
length of high quality
(start - end)
487 (38 - 524)482 (66 - 547)
definitionCHROMAT_FILE: MSMg01no083_n19.b1 PHD_FILE: MSMg01no083_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:43 2005CHROMAT_FILE: MSMg01no083_n19.g1 PHD_FILE: MSMg01no083_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
GGCTTCGCAGGTAGCATCCTGTTTTTGACTGTTTCTTTTTAAGTGAAGTC
AATATCAGTGAGCCTTGCAGTTTCATTTGTTTATTTTCTTGTTGTAAATG
AGAGTAATAATGATCCTGCTTTTTCAAATTTTACAAGCAAAGGAAATAAC
ACAGGTGAAGCTGTTTTGTTAATTATAAGAAGGAAGTAACTTCTATTAAG
CTCCAGCCATCTGTGACTTTAGTATAAAATGCTTTAAAGTTAATGATTGG
TCTGGAGCTTGTGTCAGTATTGTTTCCAGAGTAGCACTCTGTAAACATAA
CACTAATGATATCAAATTGAAGCTAATTATTCTATGTATGCATGTTTCCA
TGTATCACCCAACTTTTTTAGGGTATAATAAAGTATATAAAAAAAATCAC
TCGTTTATAGCCTAATGGAATTTTGCATGTTTATTCCTTGAGAAAATTCT
CCCCACACCTACTTCCAAAGTAGAAAAGGAAAACAGTTGGTAGAAATTTT
GATAAACATCGTGTACAGTAGGTTCTAAACCCAATAGAAAACTTTACTAT
AGATATTTTTTATTCTTCATTTCCCTTGGTTACTTCTCTCGCTCATTATC
AAAGGACAGATGTTTCACAAGGCTTCCATCTATTGCCCAGGAGATATCTC
AAAGTTTCCTTCTCAGGTGCCATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGAACAATCTACAGTGGTCAATCCAGGACAGCCA
AGCTTAGACAGTGAAGGAATTGGAAATCAGAAAGCTAGTGACAATGTAAT
AGTACAAGGGTTCCATGTTCCAGCTCCTGCAAGCAGCAGAATTCAGCAGC
TTCAGCCTTGTCGCTCTGGCTTTAGAGTCAAGAATAGAAGGGACTACTGG
AACAATTAATGCTGGCTAGGTAGAGCTAATAAATTAGCAGTGATTAAGAA
GAGATCAGCATCACCGAGGTGTGTAATCTTCTGGGAAGTGTTTTCTAAGA
GCACAAAGAAGCTGTGTTCCAGAGATAGCCAACGTTGTACCTTGTGCTGC
ACCTGAACTTGGTAATGTGTAAGAGTCACCCAGGTAATACTTGTTTTGAA
GGCATGAAGGGGTCATGAAGAGTATCTGCAGCTTGGCACTGTGAGAGGCT
GTGGAAGGGCATTGGTGAAGGTGCAGCTTCAGTTACAGTTGATGGCCCAG
GACTGAAGGGGAATGCCAAGGAGTTGAGGCTTGGCACCATGAAGAGAGCC
TGTGAGAGGCTATTGTTGAAACCTATTTGCTGTGCAAGACCTCAGTCCTA
TTGGAGATGCCAGTACCATGAACAGCAACAGCATAGGATTAAATCTATCT
GAACTTTTAGTGCTATCGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n19.b1 MSMg01no083_n19.b1 CHROMAT_FILE:
MSMg01no083_n19.b1 PHD_FILE: MSMg01no083_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:43 2005
         (487 letters)



>mm_chr2_127627908_127628791
          Length = 884

 Score =  872 bits (451), Expect = 0.0
 Identities = 475/485 (97%), Gaps = 7/485 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggcttcgcaggtagcatcctgtttttgactgtttctttttaagtgaagtca 64
           |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 gaattcctgggcat-gcaggtagcatcctgtttttgactgtttctttttaagtgaaatca 626

                                                                       
Query: 65  atatcagtgagccttgcagtttcatttgtttattttcttgttgtaaatgagagtaataat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatcagtgagccttgcagtttcatttgtttattttcttgttgtaaatgagagtaataat 566

                                                                       
Query: 125 gatcctgctttttcaaattttacaagcaaaggaaataacacaggtgaagctgttttgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatcctgctttttcaaattttacaagcaaaggaaataacacaggtgaagctgttttgtta 506

                                                                       
Query: 185 attataagaaggaagtaacttctattaagctccagccatctgtgactttagtataaaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attataagaaggaagtaacttctattaagctccagccatctgtgactttagtataaaatg 446

                                                                       
Query: 245 ctttaaagttaatgattggtctggagcttgtgtcagtattgtttccagagtagcactctg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 ctttaaagttaatgattggtctggagcttgtgtcagtattgtttccagagtaacactctg 386

                                                                       
Query: 305 taaacataacactaatgatatcaaattgaagctaattattctatgtatgcatgtttccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacataacactaatgatatcaaattgaagctaattattctatgtatgcatgtttccat 326

                                                                       
Query: 365 gtatca--cccaacttttttagggtataataaagtatataaaaaaaatcactcgtttata 422
           ||||||     |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 gtatcatt---aacttttttagggtataataaagtatat-aaaaaaatcactcgtttata 270

                                                                       
Query: 423 gcctaatggaattttgcatgtttattccttgagaaaattctccccacacctacttccaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcctaatggaattttgcatgtttattccttgagaaaattctccccacacctacttccaaa 210

                
Query: 483 gtaga 487
           |||||
Sbjct: 209 gtaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 884
Length adjustment: 10
Effective length of query: 477
Effective length of database: 874
Effective search space:   416898
Effective search space used:   416898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)