TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATCAGCAGATTGCTCTTACAAAAGATACTGAAGGGAGCTCTAC
ATCTTGAACTGTGACACATATAATCTCCACCGAATGAATAAACCTAAGGA
TAAAGCCCACAGGAATGCAGACTGGAAACTGCATACAGTCTTAGACACAG
AAACAGAAGCAGGAGAATTACGAGTTTGATCCTAGTTACAGAGCAAGAAC
AAGAGGAAGAGAATAATGATGACAAGTAAGACAAAGAAGACAGGACCAGG
AGGACCAGGAGGACCAGGAGGACCAAGAAGACTTGGAGGACCAGGAGGAA
AAGATACTTAAAGAAGAGGAAGACACAAGTCTTATCATCACAGAGCACAA
TCACCACAAAGATAAGAATAAGAGCAAAGCAAAGGAAAACAAAACAAACT
AACTAACAAACAAAAATAGTAGGTATTCCAAAGAGAAGAAATTAACAAAA
GAACAGGCACATTATCTTTGTCCCTGAATGTTAACATTCAATATAAACAT
ATTCTTTTAATTAAAAGAATGAATTAAAAAACTATTTCAAACAATGTTAC
CAAAAGGAAATGCATTTATCCGAAAAAAAACCATATAGGATGAAAGTGAA
CTATGGAAATATGAAACAAAAAGTAAGCTGGAGTAAGTTATATTGACAAC
TACAAAATAN

TTTCTGGCNNCCCCATAAAAATGGGTAAGCCTGGTGGGCGCCCTGGTCCT
TCCACAATTTTGTTGGAAACTATTTAAAAGAATTCCCCGCGAATTTTTTT
TCCTGGTTGGGAAAAAAACAAAAAGGTGGGTAAAAAAAAGCCCCCCTCCC
CCAAAAAAAAGTTGTTTAACATCTCCTCTTCCTTTTCCCCTTTCATTTGT
CTTTTGTTGTTGGTGGGTAGAAAAATATCTCCGTCGCGGATTTGTTTCCC
CCCCCTCCCCCTTCTCTAAAGGGCGAACAATAAATTTAAATTTCATCCTG
TCGGCCATTCCCTAACTTTTTCCCGCAGAATAATGTGGTGAACCACAATT
TTTACACATTTTCCCCCCCCCCCCTCTTTCTCCTCTTTTTAACTTCTTAC
TCCTTCTTTTTCGTTTTATTACCACCACTTTTCGCCCATTATATTTAATC
TCCTATACGGTGTCCAACGCTTTCTTTCCTTTTCTCCTTCATGTATTTTT
GTGCCTTACATTGTTAATTGACCGTCTTTCTCGTTCCCCTTTTTATTATA
TTTCGTCTCATTTTTTTTATCCCCCTTTTTTTCCTCCCTTTTTTTTTCTC
TCTCTTTTTCCTACTCCCCTTTTTCCTTTCTCACGCCTTTTATAAATTAT
ACCTCCCCATTCCTTCTTTTTTGCTGGACATATGTAATTTGGTGACTATC
AAGGGGCGGCGCGTTATATTTTCTATCTCCTAACTCGCCTTTTGTTCTAC
CTCGGTTTTTATTCTCTCCCCGTTTCCTCTTTTCTCACCTCTTTCTTTCT
TATTAACACCCCTATCTCTCCCCTCCCGCCCCCTCATCTACATCTGTTTT
TCCCCCTATACATTATAAATCTCATTATCG

Query= MSMg01no084_a06.b1 MSMg01no084_a06.b1 CHROMAT_FILE:
MSMg01no084_a06.b1 PHD_FILE: MSMg01no084_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:55 2005
         (656 letters)



>mm_chr2_53717569_53718624
          Length = 1056

 Score = 1160 bits (600), Expect = 0.0
 Identities = 647/680 (95%), Gaps = 27/680 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattatcagcagattgctcttacaaaagatactgaagggagctctacatcttga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ggaattcattatcagcagattgctcttacaaaagatactgaagggagctctacatcttga 236

                                                                       
Query: 64  actgtgacacatataatctccaccgaatgaataaacctaaggataaagcccacaggaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 actgtgacacatataatctccaccgaatgaataaacctaaggataaagcccacaggaatg 296

                                                                       
Query: 124 cagactggaaactgcatacagtcttagacacagaaacagaagcaggagaattacgagttt 183
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 297 cagactggaaactgcatacagtcctagacacagaaacagaagcagcagaattacgagttt 356

                                                                       
Query: 184 gatcctagttacagagcaagaacaagaggaagagaataatgatgacaagtaagacaaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gatcctagttacagagcaagaacaagaggaagagaataatgatgacaagtaagacaaaga 416

                                                                       
Query: 244 agacaggaccaggaggaccaggaggaccaggaggacca---------------------- 281
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 417 agacaggaccaggaggaccaggaggaccaggaggaccaggaggaccaggaggaccaggag 476

                                                                       
Query: 282 -----agaagacttggaggaccaggaggaaaagatacttaaagaagaggaagacacaagt 336
                |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 477 gaacaagaagacttggaggaccaggaggaaaagatacttaaagaagaggaaaacacaagt 536

                                                                       
Query: 337 cttatcatcacagagcacaatcaccacaaagataagaataagagcaaagcaaaggaaaac 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cttatcatcacagagcacaatcaccacaaagataagaataagagcaaagcaaaggaaaac 596

                                                                       
Query: 397 aaaacaaactaactaacaaacaaaaatagtaggtattccaaagagaagaaattaacaaaa 456
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 597 aaaacaaactaactaacaaacaaaaatagtaggtatttcaaagagaagaaattaacaaaa 656

                                                                       
Query: 457 gaacaggcacattatctttgtccctgaatgttaacattcaatataaacatattcttttaa 516
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaacaggcacattatctttgcccctgaatgttaacattcaatataaacatattcttttaa 716

                                                                       
Query: 517 ttaaaagaatgaattaaaaaactatttcaaacaatgttaccaaaaggaaatgcatttatc 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttaaaagaatgaattaaaaaactatttcaaacaatgttaccaaaaggaaatgcatttatc 776

                                                                       
Query: 577 cgaaaaaaaaccatataggatgaaagtgaactatggaaatatgaaacaaaaagtaagctg 636
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cgaaaaaaaaacatataggatgaaagtgaactatggaaatatgaaacaaaaagtaagctg 836

                               
Query: 637 gagtaagttatattgacaac 656
           ||||||||||||||||||||
Sbjct: 837 gagtaagttatattgacaac 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)