BAC Information

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BAC

Clone NameMSMg01-084B08
Chromosome2 (Build37)
Map Location 100,666,539 - 100,667,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084B08.T7 (MSMg01no084_b08.b1)MSMg01-084B08.TJ (MSMg01no084_b08.g1)
ACCAG304036AG304037
length700768
length of high quality
(start - end)
502 (36 - 537)511 (132 - 642)
definitionCHROMAT_FILE: MSMg01no084_b08.b1 PHD_FILE: MSMg01no084_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:00 2005CHROMAT_FILE: MSMg01no084_b08.g1 PHD_FILE: MSMg01no084_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAGC
CAAATGGCTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCAC
AAAGGAACTCTCACACTATGTACTCACTGATAAGTTGGTATTAGCCCAGA
AACTTAGGATACCCAAGATATAAGATACAATTTGGTAAACACATTAAACT
CAAGAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATAGG
AAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAAGTGTGA
CAAAAGGATGGACGATCTAGTGATTGCCATATCCAGAGATCCATCCCATG
ATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTG
AAAGGACCCAGATATACCTGTCTCTTGTGAGACTATGCCAGGACCTAGCA
AACACAGAAGTGGATGCTCACAGCCAGCTATTGAATGGACCACAGGGCCC
CCAATGAGGAACTAGAGAAAGCATCCAAGGAACTAAAGGGAACTGCAACC
CTATAGGTGGAACAATAATATGAACTAAGTAGTACCCCGGAGCTCTTGAT
TCTAGCTGCATATGTATTAAAAGATGTGCCATTCGGTCCTCCTTGCCTAG
AGAGCCCTTTGGACCCGATAACTTTATGTGTCCCAGACTAGGTTAACCCC

CCTCTTTCTCTTTTTTTTTTTCCNCNTTTTTTTTTTCTTTTNTTNNTTTA
CCCNCCTTACGATGCAGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTGAGTTAGTGAGCAT
GGGGACAACTCAGTGCTTGGAACTAAGGGATAGAGCAGGACTCTAACTAG
TGTGAATGTAAATTTAGAGAAGGCACTGCTGTCACTGCTTATGCTATAAC
AGGCCTAGTATATGGTGCTGGGGTTTCTTATCTAACCGTGAACATAGGAA
AATAGAAAGGTCAAAATAAAGATAAATAAATCTAGAATATAAAATCTGAG
CAATAAACCAATACACACATGGCTGATAAAATATGCCACATATAAATATA
AGCCAAAAAGTATATAAAGGAAAACTGAGCTAATACTATAACTGAATGAT
ACACTTTGCCAAGACTTGGTTTTTAAATAACTATTTTCTGTCAGAGTTAC
ATCCAAGAATATGCATAAATTTCTCAGATTTGACCTTGATAATTATATCT
ACAAACAATCTTATCAGATGTCACATTTAATAGGAAAATGCTTTCCACAG
AGACTGCATGTTTGCTAACAACCCTGTAACATTAATTTTAGCTCCCGTAG
TTATATACAAAAATCATAGGGAAAACATTAAAAGGCCTAATGATTAGATG
GGAAAAATGTAGTTTCCAGTTGTCCACGATGACCAGTATGTCCATGCAGA
ACATAGTAAAAGCAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_b08.g1 MSMg01no084_b08.g1 CHROMAT_FILE:
MSMg01no084_b08.g1 PHD_FILE: MSMg01no084_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:01 2005
         (511 letters)



>mm_chr2_100666339_100667249
          Length = 911

 Score =  926 bits (479), Expect = 0.0
 Identities = 503/511 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtgagttagtgagcatggggacaactcagtgcttggaactaagggatagagcaggac 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cttgtgagttagtgagcttggggacaactcagtgcttggaactaagggataaagcaggac 260

                                                                       
Query: 61  tctaactagtgtgaatgtaaatttagagaaggcactgctgtcactgcttatgctataaca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 261 tctaactagtgtgaatgtaaatttagagaaggcactactgtcactgcttatgctacaaca 320

                                                                       
Query: 121 ggcctagtatatggtgctggggtttcttatctaaccgtgaacataggaaaatagaaaggt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ggcctagtatatggtgctggggtttcttatctaaccatgaacataggaaaatagaaaggt 380

                                                                       
Query: 181 caaaataaagataaataaatctagaatataaaatctgagcaataaaccaatacacacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaataaagataaataaatctagaatataaaatctgagcaataaaccaatacacacatg 440

                                                                       
Query: 241 gctgataaaatatgccacatataaatataagccaaaaagtatataaaggaaaactgagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgataaaatatgccacatataaatataagccaaaaagtatataaaggaaaactgagct 500

                                                                       
Query: 301 aatactataactgaatgatacactttgccaagacttggtttttaaataactattttctgt 360
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 aatactgtaactgaatgatacactttgccaagacttggtttttaaataagtattttctgt 560

                                                                       
Query: 361 cagagttacatccaagaatatgcataaatttctcagatttgaccttgataattatatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagttacatccaagaatatgcataaatttctcagatttgaccttgataattatatcta 620

                                                                       
Query: 421 caaacaatcttatcagatgtcacatttaataggaaaatgctttccacagagactgcatgt 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaacaatcttagcagatgtcacatttaataggaaaatgctttccacagagactgcatgt 680

                                          
Query: 481 ttgctaacaaccctgtaacattaattttagc 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 ttgctaacaaccctgtaacattaattttagc 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)