BAC Information

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BAC

Clone NameMSMg01-084D07
Chromosome2 (Build37)
Map Location 99,542,424 - 99,542,685
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386
Downstream geneLOC668702, LOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D07.T7 (MSMg01no084_d07.b1)MSMg01-084D07.TJ (MSMg01no084_d07.g1)
ACCAG304127AG304128
length726730
length of high quality
(start - end)
338 (44 - 381)266 (72 - 337)
definitionCHROMAT_FILE: MSMg01no084_d07.b1 PHD_FILE: MSMg01no084_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:10 2005CHROMAT_FILE: MSMg01no084_d07.g1 PHD_FILE: MSMg01no084_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTATATCCGAGCCCTATTTTTTTAGCTCTGTGCCCTTTTTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAC
ATATTGGATATTAGTCCCCTATCTGATTTAGGATAGTTAAAGATACTTTC
CCAATCTGTTGGTGGCCCTTTTGTCTTATTGACAGTGTCTTTTGCCTTGC
AGAAGCTTTGCAATTTTATGAGGTCCTATTCGTTGATTCTTGATCTTATA
ACACAATCCATTGCTGTTCTATTCAGGATTTTTTCTCCTGCGCCCATATC
TTCGAGTCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGGAGTTCCTCACCCCATTATTATTTGTCCTTAGTTCAAGGAGAT
AGAATGTATCAAATGTTTTTCTTCTACTTGATAACAGTCAGTTGTGCCAG
CACTATTTGTTGACAATGCTGTCCCTTTTTTTCCCTGCATGGTTCTAGCT
CCTTTGCTAAAGATTTAAGTGACCATAGGTTGTGTTGGTTTCTTTTTCTG
GGTTATTTTATTCTATTTTCTTTGCCCTACTTTGTTCTGTCTTCTTATTC
AACCACCTTTGTACATTTTCCATTCTCTATTTCTGCTTTTGCCATTACCC
GCTTCTTATCGCCTCTGTCTTGTTTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTACCTACCTGACAATCTTCAGGCAC
TAATGCTCCTGGGGAAAGAATAGGATGGGGACTTGTTCTAAGGACAAAAG
ACACTTGTCACTTAAAGAAAAGACAAACAAATTGTCTGAAGCCCTCAGAG
AAGGTTGTGCCTCTATATAAAAACGCTCTACTCAAAATCTGACCTTTCCC
AGAGCATCTGCGTAGTCAAAGGCTCTGAGTGATTGACTGCTATGATAGAA
GTCAAATGCTAATGAGTTTACTAAACATGACTGATATGCTCTGATCCATT
CTTACTTATTTGAAACTTCAAGAATTGCTAATAATGCTACCAATTACCAA
CTTACTACTGTGTACCCTACACACGGAATCATTCCATGCTTTATATTAAT
TCATGGCTTCTTTTATTAGTATATTAACCAGCAATTCATTACTCACCATT
CCACTTATTCTTATCTTTGATCTACCAGTTGTTACGAACACCCGATTAAG
TCTTACTTAGTCTTCATTTCTCGTCTAATAGATTTTTTTTTAAAAACCAG
CTTCTAATACCAATAACTATCTATACCATAGACCCTGTAATAAAACGAAT
TATGCCTCGTACTCACTTGATTAATTCCTCTCTCCCCCTATTTTGCCATT
TTTTTTAAATTCTCACACTTTTGTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d07.g1 MSMg01no084_d07.g1 CHROMAT_FILE:
MSMg01no084_d07.g1 PHD_FILE: MSMg01no084_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:10 2005
         (266 letters)



>mm_chr2_99542224_99542888
          Length = 665

 Score =  455 bits (235), Expect = e-132
 Identities = 256/263 (97%), Gaps = 1/263 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattacctacctgacaatcttcaggcactaatgctcctggggaaagaataggatgggga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 462 tcattacctacctgacaatcttcaggcactaatgctcctggggaaagaatgggatgggga 403

                                                                       
Query: 61  cttgttctaaggacaaaagacacttgtcacttaaagaaaagacaaacaaattgtctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttgttctaaggacaaaagacacttgtcacttaaagaaaagacaaacaaattgtctgaag 343

                                                                       
Query: 121 ccctcagagaaggttgtgcctctatataaaaacgctctactcaaaatctgacctttccca 180
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 342 ccctcagagaaggttgtgcctctatataaaagcgctctacacaaaatctgacctttccca 283

                                                                       
Query: 181 gagcatctgcgtagtcaaaggctctgagtgattgactgctatgatagaagtcaaatgcta 240
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 282 gagcatctgtgtagtcaaaggctctgagtgattgactgcaatgatagaagtcaaatgcta 223

                                  
Query: 241 atgagtttactaaacatgactga 263
           |||||||||  ||||||||||||
Sbjct: 222 atgagttta-gaaacatgactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 665
Length adjustment: 9
Effective length of query: 257
Effective length of database: 656
Effective search space:   168592
Effective search space used:   168592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)