BAC Information

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BAC

Clone NameMSMg01-084D13
Chromosome2 (Build37)
Map Location 76,742,951 - 76,876,175
singlet/doubletdoublet
Overlap geneTtn
Upstream geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993, LOC667920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D13.T7 (MSMg01no084_d13.b1)MSMg01-084D13.TJ (MSMg01no084_d13.g1)
ACCAG304138AG304139
length712712
length of high quality
(start - end)
295 (38 - 332)405 (69 - 473)
definitionCHROMAT_FILE: MSMg01no084_d13.b1 PHD_FILE: MSMg01no084_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:11 2005CHROMAT_FILE: MSMg01no084_d13.g1 PHD_FILE: MSMg01no084_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,742,951 - 76,743,241)(76,875,771 - 76,876,175)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
GGTATTGTCTGTATGGCAACACTCAGCTCCAGGCTGAGAACCACCCTGGC
TGGACCACTGGAGCAGCTTTCCTAGAATCTCAGAGGGTCTCTACTGTGTA
ATAAGGTTCCAAAGAAAAAGATGCTCCGAAGAACTCTTTTTATGAGGTGG
ATGAGCAGGGTGCCTTCCCCTTGACATTCTCGAGGAGTAAGATTCACACC
CAAGAGCTTCCCTCCTACCCAGGGAGACTCTCCTTTATTAGTGCTGAGCC
TGAGGAAGCCACTCATAAAAGGATGAGGGGGAGGGAGGCAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGTTTATGCCCCATCTGTGTAATCTACGTC
CACCAGGTATGAAGAATCATTAGCTCACGGGTTAAAGAATGGGTAATGGA
GCTTTAATGATGTTCTTCACTGGAGATCCCACCCTTCCTGCAGGTCACAG
GCAGGTGCAAGAGGGAGCATGCTGGAAAGAGAGTGAGAGGTCAGGAGAAG
CTGCTAGGATCCGGTTCAAGAGGAGGGACCATGGAGAAAGTGCTGGCATG
GCTTTTACTATAGCAGTGTGCTACAACGCTGCATGCTTTCCACTCTTCTT
CTGGTCCGCATTCTGGTGAAACCACAGTGTATTCTGCCCTCTACACAGGG
GTGCAGCCTCTCCCGCTTCCCTATGCTACAGTTTACACTTCTGTGAGCTC
TGTTTAGTTTTGATTCGAGAATCATCCAGCGCGCCTTGGTTCTCCCGGGT
CTATGAAAGATTCATGGTCATTTTCAAAAAAGATCTTTTTCCTAATTTTC
TTAGTTCTTTCCTTCCCTTTCATCTTCTTCCTTCTCTTTTTCCGTTGCTT
TGCCCAAACATCTCTCCCTTCGGAGATGGCGCAGCTCTGCAACTACAGAG
AGAGCATCGGCGAATCATGTTGCCTATGTTTCTAGCCCCGCCTCTTTGGG
CTTTTATTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d13.b1 MSMg01no084_d13.b1 CHROMAT_FILE:
MSMg01no084_d13.b1 PHD_FILE: MSMg01no084_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:11 2005
         (295 letters)



>mm_chr2_76742747_76743441
          Length = 695

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggtattgtctgtatggcaacactcagctccaggctgagaaccaccctggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattccaaggtattgtctgtatggcaacactcagctccaggctgagaaccaccctggcc 264

                                                                       
Query: 65  ggaccactggagcagctttcctagaatctcagagggtctctactgtgtaataaggttcca 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggccactggagcagctttcctagaatctcagagggtctctactgtgtaataaggttcca 324

                                                                       
Query: 125 aagaaaaagatgctccgaagaactctttttatgaggtggatgagcagggtgccttcccct 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaaaaagatgctccaaagaactctttttatgaggtggatgagcagggtgccttcccct 384

                                                                       
Query: 185 tgacattctcgaggagtaagattcacacccaagagcttccctcctacccagggagactct 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgacattctcaaggagtaagattcacacccaagagcttccctcctacccagggagactct 444

                                                              
Query: 245 cctttattagtgctgagcctgaggaagccactcataaaaggatgaggggga 295
           ||| ||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 445 cctctatcagtgctgagcctgaggaagccattcaaaaaaggatgaggggga 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no084_d13.g1 MSMg01no084_d13.g1 CHROMAT_FILE:
MSMg01no084_d13.g1 PHD_FILE: MSMg01no084_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:11 2005
         (405 letters)



>mm_chr2_76875571_76876375
          Length = 805

 Score =  729 bits (377), Expect = 0.0
 Identities = 398/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagtttatgccccatctgtgtaatctacgtccaccaggtatgaagaatcattagctcac 60
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 605 ttagtttatgccccatctgtgtaatctacgcccaccaggtatggagaatcattagctcac 546

                                                                       
Query: 61  gggttaaagaatgggtaatggagctttaatgatgttcttcactggagatcccacccttcc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 545 gggttaaagaatgggtaatggagctttaatgatggtcttcactggagatcccacccttcc 486

                                                                       
Query: 121 tgcaggtcacaggcaggtgcaagagggagcatgctggaaagagagtgagaggtcaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgcaggtcacaggcaggtgcaagagggagcatgctggaaagagagtgagaggtcaggaga 426

                                                                       
Query: 181 agctgctaggatccggttcaagaggagggaccatggagaaagtgctggcatggcttttac 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 425 agctgctaggatccggttcaagaggagggaccatggagaaggtgctggcatggcttttac 366

                                                                       
Query: 241 tatagcagtgtgctacaacgctgcatgctttccactcttcttctggtccgcattctggtg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 tatagcagtgtgctacaacgctgcatgctctccactcttcttctggtccgcattctggtg 306

                                                                       
Query: 301 aaaccacagtgtattctgccctctacacaggggtgcagcctctcccgcttccctatgcta 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 305 aaaccacagtgtattctgccctctacacaggggtgcagcctcttctgcttccctatgcta 246

                                                        
Query: 361 cagtttacacttctgtgagctctgtttagttttgattcgagaatc 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagtttacacttctgtgagctctgtttagttttgattcgagaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)