BAC Information

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BAC

Clone NameMSMg01-084L02
Chromosome2 (Build37)
Map Location 32,956,865 - 32,957,323
singlet/doubletsinglet
Overlap genenone
Upstream genePpapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
Downstream geneRalgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L02.T7 (MSMg01no084_l02.b1)MSMg01-084L02.TJ (MSMg01no084_l02.g1)
ACCAG304477AG304478
length688764
length of high quality
(start - end)
294 (21 - 314)459 (134 - 592)
definitionCHROMAT_FILE: MSMg01no084_l02.b1 PHD_FILE: MSMg01no084_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:47 2005CHROMAT_FILE: MSMg01no084_l02.g1 PHD_FILE: MSMg01no084_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCATAGTTCACAGATCCGCGGAATTCTTCCTTGCGGACCACCAGAAT
TCTTTTCCAGCCCCTAAATCAGGGCAGCTTACAACCGCCTGTACTGCTAG
AGGAGCAACTGCTTCTGGACTCCGTGGGTATCTATAATTCCCCTCCACCC
CCCCCTCTCTCACACACACACACTCACACACACACACACACTTAAATCCT
ATAAAAAAAAAAAGGTGGAGAGTAATTGGGGGATACACTATATCAACATC
TGGTGTCCACACACATGCACCCACACATACAAATGTATGCATTATTCCCT
CCCCCCACAAAAGTAAAAAGTAGAAAATAAAAATGGCAGTCAATGGCTGG
CCGACACAGTGTGTTGTCGTGTGTGTTTGGTTAGTTAGTCCACGTTGGCT
TCTGAGTCTAGTTGTCTCTGATGTCAAGAAAAACATGTTCGGAGATTAAG
TTCATGTTAGTGTCATTATTAGAATGTCCTTCCCCGGTTTTGCGCACAGT
CTTCTTCTTCACCTCTGCACTGAAACTTCGATACACTACTGACTGCTTGA
CGAACAGCGAAAATTTCTTTCAACTTTCTTCATTATATTTCCCCTTCTCT
TCATTTATTTGACCTATCGTCCCATCTTCATACTCATATATTCTATTTAC
TTATTTCACCATGCGCCTTTTTGAATCCGTATATTAGG
TTTTTTTTTTTTTTTNNTTTTTTTNNNTTNTTTNTCTCNNNNNNNNNNAC
ACCCCNCCTTCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGGTAGGAGTGGG
GAATCTGGGTGAAGGTGACAAATGCATCAGAAGTCTTAGCAGTGAGAACT
GGTTGACTATGTTGACTAGGAAGCCATGACACATTTCTGAGAAGTAAGGC
ATGCTGGGAATACAGGGGTGCAACTTTCTGGGGTTCTTCACTCTCCCAAT
CTATGACTAATCAGACCATGAAGTAAAATTTCTTTACAGAGGTGTTATAG
CACAATCTATGAGGAGACAACAAAGGAAGTTGTCAGAAGGATGGCTGCAC
TTCCTAAAAGGATGTCAGTCAGGAGGGATGAAGTTGTACTTGGACGCCCC
TCCTGTTTCTAGCTCTTGTTTGTCAGGTAGTCTTCCCCACTGGGGTAATG
GTGCATGCGCATCTAAGAAGTCTGTAATTCAGACTCACTTCTCTCCCAGG
GCTCAGTGACAGTTTACGTTTGGTCTTTTGAGGAAGATTACCATGCATTT
GAAAGTTTGTCACCAATGCATACTACAGAGCATTGGTTTTGTTTTTGTTT
TTAATGCAAGCATTAAAAACAAAAAGCTTTCATAAGCATTGAAAGACTAT
ACATGTTCCTAATGAAAAGCCACTTTATCTTAAAATGCTTTGCTGGGTGA
TAAGCTTTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l02.g1 MSMg01no084_l02.g1 CHROMAT_FILE:
MSMg01no084_l02.g1 PHD_FILE: MSMg01no084_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:47 2005
         (459 letters)



>mm_chr2_32956665_32957523
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaggtaggagtggggaatctgggtgaaggtgacaaatgcatcagaagtcttagcagt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 659 ctagaggtaggagtggggaatctgggtgaaggtgaaaaatgcatcagaagtcttagcagt 600

                                                                       
Query: 61  gagaactggttgactatgttgactaggaagccatgacacatttctgagaagtaaggcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gagaactggttgactatgttgactaggaagccatgacacatttctgagaagtaaggcatg 540

                                                                       
Query: 121 ctgggaatacaggggtgcaactttctggggttcttcactctcccaatctatgactaatca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 539 ctgggaatacaggggtgcaactttctgggattcttcactctcccaatctatgactaatca 480

                                                                       
Query: 181 gaccatgaagtaaaatttctttacagaggtgttatagcacaatctatgaggagacaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaccatgaagtaaaatttctttacagaggtgttatagcacaatctatgaggagacaacaa 420

                                                                       
Query: 241 aggaagttgtcagaaggatggctgcacttcctaaaaggatgtcagtcaggagggatgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aggaagttgtcagaaggatggctgcacttcctaaaaggatgtcagtcaggagggatgaag 360

                                                                       
Query: 301 ttgtacttggacgcccctcctgtttctagctcttgtttgtcaggtagtcttccccactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttgtacttggacgcccctcctgtttctagctcttgtttgtcaggtagtcttccccactgg 300

                                                                       
Query: 361 ggtaatggtgcatgcgcatctaagaagtctgtaattcagactcacttctctcccagggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggtaatggtgcatgcgcatctaagaagtctgtaattcagactcacttctctcccagggct 240

                                                  
Query: 421 cagtgacagtttacgtttggtcttttgaggaagattacc 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cagtgacagtttacgtttggtcttttgaggaagattacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)