Query= MSMg01no084_n06.b1 MSMg01no084_n06.b1 CHROMAT_FILE:
MSMg01no084_n06.b1 PHD_FILE: MSMg01no084_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:57 2005
(504 letters)
>mm_chr2_13591695_13592598
Length = 904
Score = 787 bits (407), Expect = 0.0
Identities = 444/467 (95%), Gaps = 18/467 (3%)
Strand = Plus / Minus
Query: 1 tatggctgtttcttcccaactgatcaaaaaaccagagaaaacagtcattattttgagggc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 449 tatggctgtttcttcccaactgatcaagaaaccagagaaaacagtcattattttgagggc 390
Query: 61 tttatttgagctatgtttcccttagtaatctttgctattgtgccataaagagcatatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttatttgagctatgtttcccttagtaatctttgctattgtgccataaagagcatatttg 330
Query: 121 cattattgcatcccacccagtctataaaattcagaatttattgagacaccactgagtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cattattgcatcccacccagtctataaaattcagaatttattgagacaccactgagtaaa 270
Query: 181 gactctgtagccatcctgagtttgaatttcagagtcaagaaatagcttttgctatctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gactctgtagccatcctgagtttgaatttcagagtcaagaaatagcttttgctatctgga 210
Query: 241 aagcattcatttaaaagccaggcaccatgccggccttctagatagagagaaatgaagtgt 300
||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 209 aagcatt---------------cac---gccggccttctggatagagagaaatgaagtgt 168
Query: 301 attatggacaagttaatgcactgactagtaacaaacagggctggggagtggcttggagca 360
|| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 167 atcatggacaagttaatgtactgactagtaacaaacagggctggggaatggcttggagca 108
Query: 361 gcctggatgggtcctagcccagacctgtctgtctagagcctctgcttcagtatgcccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcctggatgggtcctagcccagacctgtctgtctagagcctctgcttcagtatgcccctc 48
Query: 421 tactttcccatctgtgaaatgctcacacagtggtgtgtgagttaaat 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tactttcccatctgtgaaatgctcacacagtggtgtgtgagttaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_n06.g1 MSMg01no084_n06.g1 CHROMAT_FILE:
MSMg01no084_n06.g1 PHD_FILE: MSMg01no084_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:58 2005
(463 letters)
>mm_chr2_13426511_13427373
Length = 863
Score = 880 bits (455), Expect = 0.0
Identities = 461/463 (99%)
Strand = Plus / Plus
Query: 1 acgtgcaccttaccagaggttgggcctgggtggcgtgttactatgcagtaacatagagcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 acgtgcaccttaccagaggttgggcctgggtggcgtgttactatgcagtaacgtagagcc 260
Query: 61 tcactatccagcttgctttcaagtggcctcaggatttaactacggtccaaaaatgagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactatccagcttgctttcaagtggcctcaggatttaactacggtccaaaaatgagtag 320
Query: 121 aacatctcaaaaatgacccataaattaagagcaaacaaaaaacacaggaaaaaaaatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatctcaaaaatgacccataaattaagagcaaacaaaaaacacaggaaaaaaaatcca 380
Query: 181 gcatatactccttaagaatttcttgtctcaccagcaatggggagggagaacctgaatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatatactccttaagaatttcttgtctcaccagcaatggggagggagaacctgaatatt 440
Query: 241 caagagacactagagaatgcctcaacaacaggacaaaaccagtcaaactagatacaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagagacactagagaatgcctcaacaacaggacaaaaccagtcaaactagatacaatat 500
Query: 301 gcaaagcttacaacaagcaatgttccaaaagaccaggttatttctaacttcactgtagtc 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gcaaagcttacaacaagcaatgttccaaaagaccaggttatttctaagttcactgtagtc 560
Query: 361 ctggtcaacagaacactagaattcattctaattttctagtagctcatttatcaatatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtcaacagaacactagaattcattctaattttctagtagctcatttatcaatatttg 620
Query: 421 gtataaatgttattttttgaattttacaactgagaatgaaatg 463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtataaatgttattttttgaattttacaactgagaatgaaatg 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
