BAC Information

Click to search

BAC

Clone NameMSMg01-085M13
Chromosome2 (Build37)
Map Location 153,541,479 - 153,635,509
singlet/doubletdoublet
Overlap geneLOC668932, Mapre1, EG329541
Upstream geneId1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b
Downstream geneLOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085M13.T7 (MSMg01no085_m13.b1)MSMg01-085M13.TJ (MSMg01no085_m13.g1)
ACCAG305267AG305268
length1,1921,322
length of high quality
(start - end)		123 (62 - 184)274 (121 - 394)
definitionCHROMAT_FILE: MSMg01no085_m13.b1 PHD_FILE: MSMg01no085_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:01 2005CHROMAT_FILE: MSMg01no085_m13.g1 PHD_FILE: MSMg01no085_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,635,387 - 153,635,509)(153,541,479 - 153,541,752)
sequence
TTTAAAAGCCAGGATAGAAAATCAAGAAGGGAGGCCCCTCTTAAGAGGTA
TCCCACAGGGCAGAGAGCAGCAGCCTGGGCCTGGGGCGGGAAGGAGCTCG
ATGCTCGGTGGCCAGGCAGTCACTATCTCTCCACCCCAAAGAGAGACCCC
AGACCGGCCCAGTTGCTCACCCAGTTGCTAGTAGAGTAGCAGGTGCCCAA
ATCAGTAGCTCATGGGAAGGGAGGCATCCACCCTTTATGAAGAAAAAGCC
CCATACACAATCAAGTCTTTCCACCTGTAAAAGCATTTTGCAATGCTGGG
CGTGGTGGCGCACGCCTTTTATCCCTGCACTTTTTTTTCAGAGGCTGGTG
CATTTCTGAGCTCTAGTTCAGTCTGGTCTACTCTGTTTGTTCCTGTACAG
CCTAGGCTATACTTATAATGGCTGTTTTCCTTTATCTACTTTTTTTTTTT
TCTTTTTACTTAACATTTTGCATTGTTCTTTTTTTCTTTTCCCATTTTTA
TTTTTCCTTTTTCTCCTCATTTTCATATTTTTCTTTGTTTTGTTTCCACT
TCTCTTATTTATCTTTTTCTTTTTTTTATTTTTCTATTTATGTTTTCTCG
TCTTTTTTTGTTTTTGTATTTCTTTGTTTCTGTTTTTGCTATCTTTTTTT
TTTATTTCTTTGCTTTTTTTTTAATGTTTCTCTTCTTCTTTTTGCTATTG
TCCCGTCTATATTTATCTACTCCTATTATTTTTTTTTTTTTTTTATTGCT
ATTATTATTTTGTTATTATACTTTTTTCTCTTCTTATCTTTTTCTTCCTA
TTTTTCTTTTTTTTTATCTTATTTTTGTGTCTTTTTTTATTTTATTTTAT
TTCTTCTTTTTCTTCTTATTTTTTTTTCTCTTTATATTTTATTATTTTAT
CTTCTCTTCTTTTTTTTTTTTTTTATTTATTTCTTTTTTTTTTTGTTTAT
TTTCTTTATTTTCTTTCTCTTTAATCATTTATTGTTTTTTTCTTTTTTTT
CTTATTCTTTTTCTTTTTTTTCTTTTTTTTTATATTTTCTTTTACTTTTA
TTTTATTTATCTTTATAAATTTTATCTTTATCTTTTTATTTTATTCTTTT
TATATTATTTTCTCTTTTTATTTCTATTTTTTTTTTTCTCTCTTTTTGCT
TATTTTTTCTCTTTCTTTCTTCTTTTCTTTTTTTTCTTTTTC

TTTATGACGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTAAAATCTGACATGAACAGACCTAGTGGAG
TTTGAATACTTGAAGGGCTCTTCATTTACATTCTTGGCCCAACGTGTCTT
AATCTTCAAATATTTATCAAATAGTTACTCCTTATTGGGTCAGAAAACAA
ACCTGGACCCAGGGTACTATGGGCACCCTGTGCAAGCTGCAGTTTAGAGC
AGTACTGACAATTTAGAGACTTTCAACCCACAGTCATCTATGTACCCCAA
GAGTGATCCACCATTTGTTCCTTGTAGTGGCGCAGTATTGGTCATGTAAT
GGTTTTGTCCTCTTGAATGGTGGTCAGTTTAGAGCCAAGGCTCTAAACTT
TTTTTTTTATTGAGATTACTGGGATTGTAACCACATGCTATGTTTCCTAT
TCGTGTTTGCAGGCCTCCTTGGTATCCTATCACCAAGCCAATCACACTCA
CTACTATGGCCCCAGTCTCTGGATTTGAACCCTTGTGAAAGCTCCAGAAC
ACCACTTGTCCTTCTATCTTTCTGCTTGCTCAGCCCTTTGCCCCCCTTGT
GTTGCTTTCTTGCTCATTTGAGCTGTTCTTTCCCAGACTACGAATTGAAG
CTGGTACTTATCATCTTTCTTGCTTCTTACTCACCTACCCTGAACCCTGC
TCATTCTCTTCTGATAGCTCTGGCTAAATCTTTCTTTTCTTGACATGTTT
CCCCTATTCTCTGCCTACAGCTGGTAAGATAAATTGCTCTAAACTGGCTA
TGTATATATGTTTTGTTTCCTTCTGTATTTTTTGTCCTTTGTTTTTTACT
ACACCTCCTGGTTCCCCTCTCTTTTTTTTCAAAATTTCTGTTCGTTCTCC
TTTCTTATAATTTCTATCTTGTGTACTCTTTTTCTTTTTTTCTTTCAATT
CTGTTCTACTTTTTTTATATTTATACTCTTTTAATACTATCTTTTTTTCT
CTTGTTCTCTCCCTTTTTTCTTTATTTTTATTATTTTCTTTCTATATTTT
ATTTTGTTCTCTTCTTAATTATTAATATGATCCTTCTCTATTATTTTTTT
CCTCTCCTTCTTCTCTTCTTCTTCTCCTATCAACCTATATCTTTTACTAC
TTCCCTACAATATATGTTTTCTTATTTATACTACTATCTTCTAATATATT
TAGTATATTAGTTCACTTCTTATATACCCTTTTTTACATCCTTTATTATT
CNTATCTTTATTCTNGTTATATTAGATCTTCCTCATATTCTCATTATTCT
CTCTACTATTAATTATGTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_m13.b1 MSMg01no085_m13.b1 CHROMAT_FILE:
MSMg01no085_m13.b1 PHD_FILE: MSMg01no085_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:01 2005
         (123 letters)



>mm_chr2_153635187_153635709
          Length = 523

 Score =  223 bits (115), Expect = 4e-63
 Identities = 121/123 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagcagcagcctgggcctggggcgggaaggagctcgatgctcggtggccaggcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 323 agagagcagcagcctgggcctggggcgggaaggagctcgatgctcggtggggaggcagtc 264

                                                                       
Query: 61  actatctctccaccccaaagagagaccccagaccggcccagttgctcacccagttgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actatctctccaccccaaagagagaccccagaccggcccagttgctcacccagttgctag 204

              
Query: 121 tag 123
           |||
Sbjct: 203 tag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no085_m13.g1 MSMg01no085_m13.g1 CHROMAT_FILE:
MSMg01no085_m13.g1 PHD_FILE: MSMg01no085_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:01 2005
         (274 letters)



>mm_chr2_153541279_153541952
          Length = 674

 Score =  522 bits (270), Expect = e-153
 Identities = 273/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttacattcttggcccaacgtgtcttaatcttcaaatatttatcaaatagttactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatttacattcttggcccaacgtgtcttaatcttcaaatatttatcaaatagttactc 260

                                                                       
Query: 61  cttattgggtcagaaaacaaacctggacccagggtactatgggcaccctgtgcaagctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattgggtcagaaaacaaacctggacccagggtactatgggcaccctgtgcaagctgc 320

                                                                       
Query: 121 agtttagagcagtactgacaatttagagactttcaacccacagtcatctatgtaccccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttagagcagtactgacaatttagagactttcaacccacagtcatctatgtaccccaa 380

                                                                       
Query: 181 gagtgatccaccatttgttccttgtagtggcgcagtattggtcatgtaatggttttgtcc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gagtgatccaccatttgttccttgtagtggggcagtattggtcatgtaatggttttgtcc 440

                                             
Query: 241 tcttgaatggtggtcagtttagagccaaggctct 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttgaatggtggtcagtttagagccaaggctct 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |