This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-086A01
Chromosome
2 (Build37)
Map Location
62,655,413 - 62,737,840
singlet/doublet
doublet
Overlap gene
Kcnh7
Upstream gene
LOC100039274
,
Slc4a10
,
Dpp4
,
Gcg
,
Fap
,
Ifih1
,
Gca
Downstream gene
EG667257
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100039274
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039274
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Slc4a10
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:94229
MGI:2150150
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dpp4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13482
MGI:94919
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gcg
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14526
MGI:95674
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fap
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14089
MGI:109608
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ifih1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71586
MGI:1918836
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gca
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:227960
MGI:1918521
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Kcnh7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:170738
MGI:2159566
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG667257
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667257
MGI:3645424
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
Slc4a10
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:15809041
GeneID:94229
MGI:2150150
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
transcript_id
: NM_033552.1
name
Dpp4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31981797
GeneID:13482
MGI:94919
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: dipeptidylpeptidase 4
transcript_id
: NM_010074.2
name
Gcg
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130931
GeneID:14526
MGI:95674
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glucagon
transcript_id
: NM_008100.3
name
Fap
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131069
GeneID:14089
MGI:109608
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast activation protein
transcript_id
: NM_007986.2
name
Ifih1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:23956207
GeneID:71586
MGI:1918836
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: interferon induced with helicase C domain 1
transcript_id
: NM_027835.1
name
Gca
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142371963
GeneID:227960
MGI:1918521
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: grancalcin
transcript_id
: NM_145523.3
name
Kcnh7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:116875835
GeneID:170738
MGI:2159566
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: potassium voltage-gated channel, subfamily H (eag-related), member 7
transcript_id
: NM_133207.2
name
EG667257
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94366980
GeneID:667257
MGI:3645424
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: predicted gene, EG667257
transcript_id
: XM_989363.1
name
Slc4a10
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:15809042
CCDS:CCDS16064.1
GeneID:94229
MGI:2150150
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence ISS]
GO_function
: GO:0015380 - anion exchanger activity [Evidence IDA]; GO:0015297 - antiporter activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]
GO_process
: GO:0006811 - ion transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence IDA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
protein_id
: NP_291030.1
name
Dpp4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753674
CCDS:CCDS16065.1
GeneID:13482
MGI:94919
definition
GO_component
: GO:0046581 - intercellular canaliculus [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0004274 - dipeptidyl-peptidase IV activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004287 - prolyl oligopeptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
GO_process
: GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: dipeptidylpeptidase 4
protein_id
: NP_034204.1
name
Gcg
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33468853
CCDS:CCDS16066.1
GeneID:14526
MGI:95674
definition
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
GO_function
: GO:0005179 - hormone activity [Evidence IEA]
GO_process
: GO:0050796 - regulation of insulin secretion [Evidence IDA]
codon_start
: 1
note
: glucagon-like peptide I
product
: glucagon
protein_id
: NP_032126.1
name
Fap
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6679749
CCDS:CCDS16067.1
GeneID:14089
MGI:109608
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004274 - dipeptidyl-peptidase IV activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004287 - prolyl oligopeptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
GO_process
: GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: fibroblast activation protein
protein_id
: NP_032012.1
name
Ifih1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23956208
CCDS:CCDS16068.1
GeneID:71586
MGI:1918836
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO_process
: GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA]; GO:0009615 - response to virus [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: melanoma differentiation associated protein-5
product
: interferon induced with helicase C domain 1
protein_id
: NP_082111.1
name
Gca
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21704030
CCDS:CCDS16069.1
GeneID:227960
MGI:1918521
definition
GO_component
: GO:0005829 - cytosol [Evidence TAS]
codon_start
: 1
product
: grancalcin
protein_id
: NP_663498.1
name
Kcnh7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:116875836
GeneID:170738
MGI:2159566
definition
GO_function
: GO:0030955 - potassium ion binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]
GO_process
: GO:0006810 - transport [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA]
codon_start
: 1
note
: potassium channel protein erg3; potassium voltage-gated channel subfamily H (eag-related) member 7
product
: potassium voltage-gated channel, subfamily H (eag-related), member 7
protein_id
: NP_573470.2
name
EG667257
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94366981
GeneID:667257
MGI:3645424
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_994457.1
name
LOC100039274
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039274
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-439F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420C18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-054B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406D21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-278N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-299C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-427I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188N03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072E20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379O11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369C13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-089P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-330L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288O05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-527P22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370H21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-293K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-104D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-318L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-313B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-330G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139C14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-153D15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-213B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030E14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-226H17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-099C02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-181N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-240N20
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