BAC Information

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BAC

Clone NameMSMg01-086D16
Chromosome2 (Build37)
Map Location 85,351,253 - 85,351,776
singlet/doubletsinglet
Overlap gene4833423E24Rik
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995
Downstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086D16.T7 (MSMg01no086_d16.b1)MSMg01-086D16.TJ (MSMg01no086_d16.g1)
ACCAG305600AG305601
length657661
length of high quality
(start - end)
473 (45 - 517)513 (58 - 570)
definitionCHROMAT_FILE: MSMg01no086_d16.b1 PHD_FILE: MSMg01no086_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:53 2005CHROMAT_FILE: MSMg01no086_d16.g1 PHD_FILE: MSMg01no086_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTCCGAGAGATCCGCGGAATTCACTACTGTACCCTCGTATTGAG
TAAAATTCTCCACCTTTATAGAACTGAATGGTTCCAGATTTTATACTCTT
CCCTTCAGTTCCTCCTTCAATTTTTCTCTATACAAAGGTATTTCTTAGAA
TTTGTTACCAATATTAGATATTTTCCACCCTTTGCACATGGAGGAAAGTT
TTTCATGAATACCACCTGCAAGCTCATAACACACACACACACACACACAC
ACACACACACACACACACACTCACACACACATTTATTTGTTTATTTAATG
AGTATTGGGACACATGCATAGATGTTAGAGGACAGACTGTGGGAACCAGT
TCTCTCCTTATACCATGGGGTTCATTCATCACAAGGTTCAAATTCAGGCC
GTCATGGCTGGCAGCAAATTGTCTTTACCTATTGAGCCATCTCATAGACT
ATAAAGCCATTTTGTATTGTACTGAACCTTGCTTCTTTAGTGAGCTTCTG
AAACTAAGACTGTTTACTAGTTATCAATTAATGTACACCTAACATCTACC
ACTGTGCCTAGAACACAATGTGTAGTGAATACCCCCCTGATGAGTAAGGT
AAATATGAAAAAGTACGCGGTCTCAGCAGTTCTGCTTGACGAGTCCCAAT
GACTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTCTGTTTCTATTTTGTGGAAGAGTTTGAAGAATGTTGGTAT
TAGGTCTGTTTGAAGGTCTGCTAGAATTCTGTACTAAACCCATGTGGTCC
TGGGCTTTTTTTTTTTTTTGGTTGTGAAACTTTAATTACTGCTTCTATTT
CTTTAGGTCTATGGGACTGTTTAGAAGGTTTATCTGACTTTGATTTAACC
TTAGTATCTGTCTAGAAAATTGTCCATTTCACCCAGATTTTCCAGTTTTG
TTGAGTACAGGCTTTGTAGTAGGTTCTGATGTTTTTTTGAATTTCCTCGG
CTTCTATGTTATATCTCTCTCATTTCTGATTTTGTTAATTTGAATATTGT
CTCTGTGCTCTCTGGTTAGTCTATGAGTACATCTATCTTATTGACTTTCT
CAAAGAACCAGCCCCTTGTTGGTTGATTCTTTGTATAGTCCTTTTTGTTT
CTACTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTACTC
CTCTTGGTTGGATTTGCTTCCTTTTGTTCCAGAGCTTTCAGATATGTTGC
CAAGCTGCTAGCGTATGCTCTCTCCAGGTTCCTTCTGGAGGCATTCATAA
TTACGAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_d16.b1 MSMg01no086_d16.b1 CHROMAT_FILE:
MSMg01no086_d16.b1 PHD_FILE: MSMg01no086_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:53 2005
         (473 letters)



>mm_chr2_85351053_85351924
          Length = 872

 Score =  787 bits (407), Expect = 0.0
 Identities = 470/525 (89%), Gaps = 53/525 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgagtaaaattctccacctttatagaactgaatggttccagattttatactcttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgagtaaaattctccacctttatagaactgaatggttccagattttatactcttccct 260

                                                                       
Query: 61  tcagttcctccttcaatttttctctatacaaaggtatttcttagaatttgttaccaatat 120
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 261 tcagttcctccttcaatttttctctacacaaaggtatttctt-gaatttgttaccaatat 319

                                                                       
Query: 121 tagatattttccaccctttgcacatggaggaaagtttttcatgaataccacctgcaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagatattttccaccctttgcacatggaggaaagtttttcatgaataccacctgcaagct 379

                                                                       
Query: 181 cataacacacacacacac------------------------------------------ 198
           ||||||||||||||||||                                          
Sbjct: 380 cataacacacacacacacacacacacacacacacacacacacacacacacacatacacac 439

                                                                       
Query: 199 ----------acacacacacacacacacacacacacactcacacacacatttatttgttt 248
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acacacacatacacacacacacacacacacacacacactcacacacacatttatttgttt 499

                                                                       
Query: 249 atttaatgagtattgggacacatgcatagatgttagaggacagactgtgggaaccagttc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atttaatgagtattgggacacatgcatagatgttagaggacagactgtgggaaccagttc 559

                                                                       
Query: 309 tctccttataccatggggttcattcatcacaaggttcaaattcaggccgtcatggctggc 368
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 tctccttataccatggggttcattcatcacaaggttcaaattcaggccatcatggctggc 619

                                                                       
Query: 369 agcaaattgtctttacctattgagccatctcatagactataaagccattttgtattgtac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcaaattgtctttacctattgagccatctcatagactataaagccattttgtattgtac 679

                                                        
Query: 429 tgaaccttgcttctttagtgagcttctgaaactaagactgtttac 473
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaaccttgcttctttagtgagcttctgaaactaagactgtttac 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space:   399106
Effective search space used:   399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)