Query= MSMg01no086_m18.b1 MSMg01no086_m18.b1 CHROMAT_FILE:
MSMg01no086_m18.b1 PHD_FILE: MSMg01no086_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:40 2005
(590 letters)
>mm_chr2_96225637_96226626
Length = 990
Score = 1118 bits (578), Expect = 0.0
Identities = 587/590 (99%)
Strand = Plus / Plus
Query: 1 agcccacattcactaactgcatctccccctctcaaatgaatttctgacaatatttttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccacattcactaactgcatctccccctctcaaatgaatttctgacaatatttttata 260
Query: 61 ttgtttctttagttatttaacacccacggcctcatattgaagctattgtagactaaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttctttagttatttaacacccacggcctcatattgaagctattgtagactaaatta 320
Query: 121 ttttactctttttcccacctcctgagttggtgatttttagaatgttacttaagactaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttactctttttcccacctcctgagttggtgatttttagaatgttacttaagactaaaa 380
Query: 181 attactatgttaattcaatgtaaaagagtgaaatagttatcaaaaatcctaacataatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attactatgttaattcaatgtaaaagagtgaaatagttatcaaaaatcctaacataatat 440
Query: 241 ttgagaaacttcaaaaaacaaacctattttagtacttatgaaatgtctataagtacttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagaaacttcaaaaaacaaacctattttagtacttatgaaatgtctataagtacttga 500
Query: 301 tattgtgtatatttaattgccttttttacaatattacaggaatttgaataagcgataatg 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgtgtatatttaattgccttttttacaatattacaggaatttgaataagcgataatg 560
Query: 361 tttttcgtttgtaagacttacatagttagaatgaaccaatgacaatagcaatagaagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttcgtttgtaagacttacatagttagaatgaaccaatgacaatagcaatagaagaga 620
Query: 421 gatagagtcttcaggtattcacgtactgcagcaattccccttcttaggtatcatttctac 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gatagagtcttcaggtattcacgtactgcagcaattccccttcttaggtaccatttctac 680
Query: 481 ctctatcatatcagactatgcttgggcttcaccttgtttcaattcacaaaggccatactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctatcatatcagactatgcttgggcttcaccttgtttcaattcacaaaggccatactt 740
Query: 541 gttatacagaaattgcccaacaactatgactattggaagagatacacaac 590
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 gttatacagaaattgcccaacaactatgacttttggaagagatacacaac 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_m18.g1 MSMg01no086_m18.g1 CHROMAT_FILE:
MSMg01no086_m18.g1 PHD_FILE: MSMg01no086_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:40 2005
(565 letters)
>mm_chr2_96379710_96380679
Length = 970
Score = 971 bits (502), Expect = 0.0
Identities = 543/562 (96%), Gaps = 13/562 (2%)
Strand = Plus / Minus
Query: 14 aaaaaaaaaaa--cctcaccctctgtcagcctgctctgcttctattttctagtgttggct 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aaaaaaaaaaatccctcaccctctgtcagcctgctctgcttctattttctagtgttggct 711
Query: 72 ataaactctcttttgagttctgctcagattcattttttgtatatctcccatcctctatgt 131
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 710 ataaactctcttttgagttctgctcagattcattttttgtatatctcccaacctctatgt 651
Query: 132 aacttatcttttagctcata--tcacttactcttcctggtaagcaggcacccacaaaaac 189
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aacttatcttttagctcataattcacttactcttcctggtaagcaggcacccacaaaaac 591
Query: 190 atgctaaactgaggctataaaacatcatcctcttcataacctttgcatatc------ctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 590 atgctaaactgaggctataaaacatcatcctcttcataacctttgcatatcctctatctt 531
Query: 244 ctctaaacttaaaagaaaaaggccaagaatagaacttggtaaagattcagactttcaagc 303
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 530 ctgtaaacttaaaagaaaaagg-caagaatagaacttggtaaagattcagactttcaatc 472
Query: 304 tgaagaattaaacaatggacatagctacagagttccagagttacatattgcagattctct 363
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 471 tgaagaattaaacaatggacatagttacatagttccagagttacatattgcagattctct 412
Query: 364 ttcctcagtaatatgaatctcaaactgtagcttagtactttattaataggaaactggata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttcctcagtaatatgaatctcaaactgtagcttagtactttattaataggaaactggata 352
Query: 424 ttaccctggtctacagtgtgtgtgtggacatacactgagtgccagctatgattggcttct 483
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttaccctggtcta--gtgtgtgtgtggacatacactgagtgccagctatgattggcttct 294
Query: 484 atcagattgctttcaaggcaataaacagtgctatttcttaatacttttctctatcctgtt 543
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 293 atcagattgctttcaaggcaataaagagtgctatttcttaatacttttctctatcctgtt 234
Query: 544 gcctgcaagttggtggccggag 565
||||||||||||||||||||||
Sbjct: 233 gcctgcaagttggtggccggag 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 970
Length adjustment: 10
Effective length of query: 555
Effective length of database: 960
Effective search space: 532800
Effective search space used: 532800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
