BAC Information

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BAC

Clone NameMSMg01-088D17
Chromosome2 (Build37)
Map Location 168,807,535 - 168,807,697
singlet/doubletsinglet
Overlap genenone
Upstream gene2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64
Downstream geneLOC100043909, EG668954, Tshz2, LOC100043737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D17.T7 (MSMg01no088_d17.b1)MSMg01-088D17.TJ (MSMg01no088_d17.g1)
ACCAG307045AG307046
length789770
length of high quality
(start - end)
462 (143 - 604)361 (131 - 491)
definitionCHROMAT_FILE: MSMg01no088_d17.b1 PHD_FILE: MSMg01no088_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:38 2005CHROMAT_FILE: MSMg01no088_d17.g1 PHD_FILE: MSMg01no088_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCC
CCNCCNNCCAAAAAAAANCCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGCGGAATTCTATTCTGCCGATATCATCTGTGTC
AGAACACCCCCTCCCCCCTCAACACACCGCACACTCACACACACACACAC
ACACACACACACACACACTTACATATACACACTCACAGACTCACACACAC
TTACACTCAAACTCTCACACACACTTAGACATACACTCTCATACACATTC
ACAAAACACTCACACACACTTAAACACACTTACAGACACCTACACACTGA
CACACACTAGCCCTCACAGACATACTCTCACACACACACAAGGACATACA
TTCATACACACACACACTTGAACTCACAGACAGACTGACTCACATACTTA
CACACTGATGATACACAGTCACACACTCCCACTCACAGACACTCTCACAC
ACACACTCACACACATACTGACACACACTCACATACACACTTGAACTCAG
ATACACTCACAGACACATACCACTCACACACACATATAGACAAACACACA
CACACTAAACACACTCACACACATACTGACACACACTCACATACACACTT
TGAACTCACAGATACACTCATAGACACTTTTCATTCACACACACTCATAG
ACAAATACAAACACTTATCACTCACAATCACACTTATACACTTTTTTTCA
AAAGTCTCTTTCTCATTCACACATACCAAAAATAGTGCG
NNNNNNNNNTTTTNNNNNNNCCCCCCNNNNNCCCTTTNCCCCCTTTTCTA
ATTTCCGAATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGTTACAATGCCAGTTG
GGCCGCAGAACAACTTGGCATTGTACCCCGCTGGCAGGTGAGATGAACAT
CCGGTCCCGAGCGGTTTGAGTGTATCCAAGGTTGCCGCTCACCCTCCTCT
ATGCTGCCAGAAAAGAGAAGCAACATTTAAGAAGCAGGGGATTTTTTTTT
TCCGAGACAGAGCTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCT
GTAGACCAGGCTGGCCTCGAACTCATAAACCCGCCTGCCTCTGCCTCCCG
AGTGCTGGGATTAAAGGTGTGCACCACCACGCCCAGTTTTTTTTTTTTAA
AGATTGATTTTATTTCCTTCACGTGAACATGATTATGTATATGCATACAT
GCCTACAGGGATCCCTGGAGTCCAGAAGAGGGCGTTAGATCCCTTGGAGC
TGGCATCACAGTATCCGCGAGTATCCTGACTTATGTGCTGGTAACTCAGG
TCCGCCGACCGATGTCTCCGTCATTTCCCTAAGTTGCATCTCTTCCCTTG
GTATGTTTTTTCTGCTCTAATATGGCAATTCTCTGACCATCTCGACCCCT
ATTGATTCTTTATTTGTTATTGTTTCCCCCAATAGTACTTAGTTATCACG
AGCCTCTTTAACAATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d17.g1 MSMg01no088_d17.g1 CHROMAT_FILE:
MSMg01no088_d17.g1 PHD_FILE: MSMg01no088_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:38 2005
         (361 letters)



>mm_chr2_168807340_168808097
          Length = 758

 Score =  238 bits (123), Expect = 4e-67
 Identities = 154/171 (90%), Gaps = 13/171 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggttacaatgccagttgggccgcagaacaacttggcattgtacccc-----gctggc 55
           ||||||||||| |||||||||||||||||||||||||||||||     |     ||||||
Sbjct: 358 attggttacaacgccagttgggccgcagaacaacttggcattg-----caggaggctggc 304

                                                                       
Query: 56  aggtgagatgaacatccggtcccgagcggtttgagtgtatccaaggttgccgctcaccct 115
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggtgagatgagcatccgttcccgagcggtttgagtgtatccaaggttgccgctcaccct 244

                                                              
Query: 116 cctctatgctgccagaaaagagaagcaacatttaagaagcaggggattttt 166
           |||||||||||||||| ||||||   |||||||||||||||||||||||||
Sbjct: 243 cctctatgctgccagagaagaga---aacatttaagaagcaggggattttt 196


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 758
Length adjustment: 9
Effective length of query: 352
Effective length of database: 749
Effective search space:   263648
Effective search space used:   263648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)