Query= MSMg01no088_j03.b1 MSMg01no088_j03.b1 CHROMAT_FILE:
MSMg01no088_j03.b1 PHD_FILE: MSMg01no088_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:05 2005
(290 letters)
>mm_chr2_59183725_59184413
Length = 689
Score = 472 bits (244), Expect = e-137
Identities = 283/306 (92%), Gaps = 17/306 (5%)
Strand = Plus / Minus
Query: 1 ctggaaagacttgaagagctgtaatgtcaaactcagcattggcattctgccgcattaata 60
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 439 ctggaaagacttgaagagctgtaatgtcaaactcagcattggcattcagctg-attaata 381
Query: 61 aattgtccttatgcatgtaccaggaccaagcttttgttgttaaggatacaacagcagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattgtccttatgcatgtaccaggaccaagcttttgttgttaaggatacaacagcagata 321
Query: 121 agggacaaagtcccaggaccttgggagtgagatgctagcagacaactcaaaacagtcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agggacaaagtcccaggaccttgggagtgagatgctagcagacaactcaaaacagtcagt 261
Query: 181 gccagggagaacttagtgggaactgtgtgtgtgcgcgc----------------gagcgc 224
|||||||||||||||||||||||||||| || |||||| ||||||
Sbjct: 260 gccagggagaacttagtgggaactgtgtatgcgcgcgcgagcgcgggcatgggagagcgc 201
Query: 225 gggcatgggagagcgctgctgacctattttttgaagaaggtacttggcattcccagttcc 284
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 gggcatgggagagcgctgctgacctacgttttgaagaaggtacttggcattcccagttcc 141
Query: 285 atttcg 290
||||||
Sbjct: 140 atttcg 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no088_j03.g1 MSMg01no088_j03.g1 CHROMAT_FILE:
MSMg01no088_j03.g1 PHD_FILE: MSMg01no088_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:05 2005
(348 letters)
>mm_chr2_59038364_59039111
Length = 748
Score = 650 bits (336), Expect = 0.0
Identities = 345/348 (99%)
Strand = Plus / Plus
Query: 1 aattcttcctttaagaaactcaaagctcctacctaaaaggagacaagttgctcaactaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcttcctttaagaaactcaaagctcctacctaaaaggagacaagttgctcaactaga 260
Query: 61 ataatcaaaggtgaaatctgattctttccgacatttttagtgccaagcagtgaacaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatcaaaggtgaaatctgattctttccgacatttttagtgccaagcagtgaacaaaag 320
Query: 121 gcttcttcaaggtggcgcattgttcggtggttctgtgtgtgtggatgtgagcagcccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcttcaaggtggcgcattgttcggtggttctgtgtgtgtggatgtgagcagcccaat 380
Query: 181 gtattaaacattttcccaggcttgacagtggagtgccactttctgttttcagttccttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattaaacattttcccaggcttgacagtggagtgccactttctgttttcagttccttga 440
Query: 241 atagtaaattttgttctgtcagcagccatttcattaaatgcctcagcacaagtgtgttag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagtaaagcctgttctgtcagcagccatttcattaaatgcctcagcacaagtgtgttag 500
Query: 301 acacagacacaggagacagggagcctgtctcaggcttaagtctgagta 348
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagacacaggagacagggagcctgtctcaggcttaagtctgagta 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
