BAC Information

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BAC

Clone NameMSMg01-088L07
Chromosome2 (Build37)
Map Location 77,843,673 - 77,844,079
singlet/doubletsinglet
Overlap geneLOC667920
Upstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneOTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088L07.T7 (MSMg01no088_l07.b1)MSMg01-088L07.TJ (MSMg01no088_l07.g1)
ACCAG307392AG307393
length697687
length of high quality
(start - end)
412 (36 - 447)247 (50 - 296)
definitionCHROMAT_FILE: MSMg01no088_l07.b1 PHD_FILE: MSMg01no088_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:16 2005CHROMAT_FILE: MSMg01no088_l07.g1 PHD_FILE: MSMg01no088_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAGT
GTCACTGTTTCCTAGCATATGTCTATATCCAGAGTCTCAGGAATGGTCTT
ATTCTTTCTCGTGTATGTCAGTGATTGGGGCTGTGCTCCAAGGGAACACA
TATATTATTTGGTACCTTTTCTCTCTCTTAATGGCTCACATCAACATCCT
CATCCTCCCGAACGTGGTCTGACTCAGAGTGTCATTTGGCATATGCATCC
CTGCCACGTTTCAGCCTTGCTCTGTCATGCAGAAAAGTCGAAGCAGCAGG
CTGTTTACATTGTGCTGGGCTGACGGTTTCCTGTTCATTCAAATAACATC
TGTGAGATTTGCATGGATTAATACTCAGATAACAGAAGTTGACTTTTATT
CACATAACAGAGATAGGGTCTGGTTCTTTTAGCAAGGAGCTGGAGCTGGA
GAAGTGTCATATCTACTTGTTGGAATGAATCACTGTCCATTATTCTATCA
AAGGTTTTCTATCTAGCCTGCCAATGTACTTAGGCTGAAGTCCCAGCATC
TTTATAAAGAAAATATCTCGAGAAATGTTCTCAACATTATGTTATTGGGA
GATTGCACACATCTAAATAAAAACTTCATTTAATGCCTCCTCTGCTCTTT
GATTGTTTAAACGCTCTGCGCCCCATATTCCTACCACTTTTCCCATT
TGGCGGCCGCCTGTCAACAAATTTAGGTGACCTATAGAATGTCCAGAGAA
ATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTATATCC
CGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGG
CGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGAT
TCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATA
GTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATT
TTTTGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGCTATCTGG
CGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAATACAGGATCTTTC
CCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGTCCAGTTGTCTGGAGTCG
AAGATGTCGCATTCTCATAAGCTCTGTGCCTCTTGCCGGGAATTTGTTTG
GTCGTCTGTAGATGAAGATGGTGTCGCCCCAGAATCTTCGTGATTCTCTC
GCCCGTCCATGATACGCCTGTCCCTCTGTTTTTCTTTTGTTTTCCTGCGC
ACCCTGTTTTCTTTGGCACTCCGGATCCTTTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_l07.b1 MSMg01no088_l07.b1 CHROMAT_FILE:
MSMg01no088_l07.b1 PHD_FILE: MSMg01no088_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:16 2005
         (412 letters)



>mm_chr2_77843469_77844279
          Length = 811

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagtgtcactgtttcctagcatatgtctatatccagagtctcaggaatggtct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagtgtcagtgtttcctagcatatgtctatatccagagtctcaggaatggtct 264

                                                                       
Query: 65  tattctttctcgtgtatgtcagtgattggggctgtgctccaagggaacacatatattatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattctttctcgtgtatgtcagtgattggggctgtgctccaagggaacacatatattatt 324

                                                                       
Query: 125 tggtaccttttctctctcttaatggctcacatcaacatcctcatcctcccgaacgtggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtaccttttctctctcttaatggctcacatcaacatcctcatcctcccgaacgtggtc 384

                                                                       
Query: 185 tgactcagagtgtcatttggcatatgcatccctgccacgtttcagccttgctctgtcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgactcagagtgtcatttggcatatgcatccctgccacgtttcagccttgctctgtcatg 444

                                                                       
Query: 245 cagaaaagtcgaagcagcaggctgtttacattgtgctgggctgacggtttcctgttcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaaaagtcgaagcagcaggctgtttacattgtgctgggctgacggtttcctgttcatt 504

                                                                       
Query: 305 caaataacatctgtgagatttgcatggattaatactcagataacagaagttgacttttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaataacatctgtgagatttgcatggattaatactcagataacagaagttgacttttat 564

                                                           
Query: 365 tcacataacagagatagggtctggttcttttagcaaggagctggagct 412
           ||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 tcaaataa-agagatagggtctggttcttttagtaaggagctggagct 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space:   323206
Effective search space used:   323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)