BAC Information

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BAC

Clone NameMSMg01-089A01
Chromosome2 (Build37)
Map Location 114,256,973 - 114,257,404
singlet/doubletsinglet
Overlap genenone
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneAtpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A01.T7 (MSMg01no089_a01.b1)MSMg01-089A01.TJ (MSMg01no089_a01.g1)
ACCAG307613AG307614
length865656
length of high quality
(start - end)
66 (160 - 225)422 (54 - 475)
definitionCHROMAT_FILE: MSMg01no089_a01.b1 PHD_FILE: MSMg01no089_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:39 2005CHROMAT_FILE: MSMg01no089_a01.g1 PHD_FILE: MSMg01no089_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCTTTTTTCTCCCCCCCCCCTTTTTCCCCTTTTTCTTTTTTCTTCC
CTTTCTTTCCCTTTCCCACCTCACCCCCTTTTAAATCTATXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGATTCTACTAAAAA
CGCTGCTTAGAAGTGTCATAATACTTATTTTGTAGTGGAATAAAGAAGGA
AAAGGAAAGAAAAAGGGAAACGGGTAATTAAAACAATGAGATTTTCTAAA
GAAAACTTCAATTGTGAAGTCAAGGACATTGTAGACAGAGGTAAATGCTG
TCTTTCCCAAAAAAGAAATGTCTTTTTTCAAAATTTCTTTAAAAAAATTT
CCCCTGTATAAGCCCGCAATTGGTGTACTGTTAAACGCTTTATGGGCCTT
CTTAAAGCTGAAATTTTTGAATTAACCCTATACCCCCTCCCCCCTGGAAT
ATTGGGCTTTTCTACATACACTTATATACCCTTCTTCTTTCTAACCCATT
CTTCCCTCTTTTTTGCAANCTCCCCACCCCTCTTTTTCCTTCTTTCCCTC
TCTCTCCAACTCCTTTTTTTAAATAAATCACAAGTTGTCCCCCTTGTTTG
CCCCACACCATAAAAAACCCTACACCTCTCTTCTTTTCCCGCTCTCCACA
CCAAAGCCCCTCTTTTAAATTCCCCCCCCCTTCCCCTCCTTTTTTTTTAT
ATCTCCGCTCTTTAACAATCGCCCTTATTTCCCTCCTTTAATTTTCCCCC
TCTTTTTCCTTCTTTTCCCCATCCCCTCCTCTCACCACCGATCTTTATTT
TTCTTTTTTTTTCCTGCCCCCTCCACCCCACCTCCCTTTTATTATTTCCT
CCCCCCCCCTTCTTG
GGCGGCCGCCTGTTTCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATCTTCCAAAGCAAAGCATAAAGGAGAAAAATAATTTTACCTGATGT
AGTTTGCAATTCTTTGTGTTTTGTTAAATTAAATATTTAAAAAACTTAAA
TTCAAAACCTGTATCTTTAAATAGTTTTAGTTAGTTGCCAAATATTTTTC
TATAACTGTTACAGCTCAACATGAAATCATTAAAATTTTTATATTTGAAT
TGTTTTTATTAAAGCTAATGTTTGTTTGCCTTATCAGTTGCAGAAATCTA
CTGTTGCTGTTTACCTGAAAGGTAGTATTTACAGTTCTGAGGTTGTGCTG
TCATTGAGAACATGTGAGAACATGATAGAAGTTGTCCTCAGAAGGTAAAT
AGGACTTAGATTTAGAACCAGAAACTAAAAATCGGAATACTAAAAAACAA
AACAAAAAAAAAAAAAAAAACAACGAATGAATGAAAGAAAAGAAAAGAAA
AAGAGAGAGAGAGATTCATTCAAGTTATTAGCCTTATTGGGTTTCGATAA
CAAAATGCCTCAAGCGGATGTCTTAAGCAGTAGGAAAGTGTTTCTGTTTC
TCACAGCTTTGAAGGGCAGCAGAAGCCTGTGATTTCTAATCGGATCTCTA
GTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a01.g1 MSMg01no089_a01.g1 CHROMAT_FILE:
MSMg01no089_a01.g1 PHD_FILE: MSMg01no089_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:39 2005
         (422 letters)



>mm_chr2_114256607_114257428
          Length = 822

 Score =  766 bits (396), Expect = 0.0
 Identities = 419/432 (96%), Gaps = 12/432 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttcca-aagcaaagcataaaggagaaaaataattttacctgatgtagtttgcaattc 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atcttccacaagcaaagcataaaggagaaaaataattttacctgatgtagtttgcaattc 739

                                                                       
Query: 60  tttgtgttttgttaaattaaatatttaaaaaacttaaattcaaaacctgtatctttaaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttgtgttttgttaaattaaatatttaaaaaacttaaattcaaaacctgtatctttaaat 679

                                                                       
Query: 120 agttttagttagttgccaaatatttttctataactgttacagctcaacatgaaatcatta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agttttagttagttgccaaatatttttctataactgttacagctcaacatgaaatcatta 619

                                                                       
Query: 180 aaatttttatatttgaattgtttttattaaagctaatgtttgtttgccttatcagttgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaatttttatatttgaattgtttttattaaagctaatgtttgtttgccttatcagttgca 559

                                                                       
Query: 240 gaaatctactgttgctgtttacctgaaaggtagtatttacagttctgaggttgtgctgtc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaaatctactgttgctgtttacctgaaaggtagtatttacagttctgaggttgtgctgtc 499

                                                                       
Query: 300 attgagaacatgtgagaacatgatagaagttgtcctcagaaggtaaataggacttagatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attgagaacatgtgagaacatgatagaagttgtcctcagaaggtaaataggacttagatt 439

                                                                       
Query: 360 tagaaccagaaactaaaaatcggaatactaaaaaa---------caaaa-caaa-aaaaa 408
           |||||||||||||||||||||||||||| ||||||         ||||| |||| |||||
Sbjct: 438 tagaaccagaaactaaaaatcggaatacaaaaaaaaaaaaaaaacaaaaacaaacaaaaa 379

                       
Query: 409 aaaaaaaaacaa 420
           ||||||||||||
Sbjct: 378 aaaaaaaaacaa 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)