BAC Information

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BAC

Clone NameMSMg01-089M08
Chromosome2 (Build37)
Map Location 45,616,904 - 45,617,537
singlet/doubletsinglet
Overlap genenone
Upstream geneGtdc1, Zeb2, LOC100042661, LOC100041337
Downstream geneLOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089M08.T7 (MSMg01no089_m08.b1)MSMg01-089M08.TJ (MSMg01no089_m08.g1)
ACCAG308181AG308182
length6911,377
length of high quality
(start - end)		628 (64 - 691)---
definitionCHROMAT_FILE: MSMg01no089_m08.b1 PHD_FILE: MSMg01no089_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:42 2005CHROMAT_FILE: MSMg01no089_m08.g1 PHD_FILE: MSMg01no089_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTCAACTATTGTCTTTATAATGTAGCTTATTTTAAAATATCGTTTTATGG
GAAATTCTTCCCAAACTCTTAAAAGTAATATAACATATGTGATTCTAGGT
CTGAACTCAGGTTGTTAAGCATGGCTTTCTATGTATGGGAAATAAATAAC
ATTCAGTCACTCAACAAACAGTTATTGAATAATTATCATATAGAAAGTAT
TGGTCTTTGTACATAGAATGTACTGGTGAACAATTTCTTTAATGAAATGA
ACAAACCTGAAAGGCCATCATGCAAAGGCTATATAGGACCAGCCCATGTA
TGTTCATGTACTGTGAGACACACCTGAGAAAATAATATAAAGCAGGGGAG
GTTCATTTTGTTTCAAGCATTCAGAACTTCCAACCCTTGGCTGCAGGCTA
TATAATGCTTTGGGACCTGAAATGAAACAAAAGATATAGTACAAGAAAGA
TTCTAGCTTCATTCAAACCAGGAAGCAGAAAGTAACAGAAAGATTCCAAG
ACAAGAAACTATTCCAACAACCTGGCCCTCACAATGTATTTTTCCAGCTA
GGACTCTATACTAAAATTCTACCTCCTCAAATTAAACCTTCACCTGGAGA
CCAAGTCTTCCACACATCTGCATATGAGGGCCATATCCTCT

TCGCCTTCTCTTTTTTTGCGTCCCTTTTTTTCGGGTGCTGTTGTGTTGGT
GTGNGCGCGCGTGGCGTCTGTGCTGTTGTCGCGCGGGTGCGCTCGCTGGT
CTGTGGTTCGCGTTTCTGGGCCTCAGCGGGGCGGCGGGGGGAGGCGCGGC
GTGTGCGGTGTTGCGTGTGTGGGTTCCCTGTTAGCGCGATGTTATGTCCT
GCAGCCCCTGACCGGCTGCACGCTTCCGCCTTCCGCTTATGCGCGTCTTT
TTGATGCCCCTAGACTTTCTCTCTTTGTGTCGGCGTTCTTTCGTCGTTGG
GCCTGCGCCTTTTCCCGCGGCGTCCTTTCTGTCGGGCGGGGCGCCGGCGG
TGGTCGCGCGGGTGTTCTGAAGTATGTTATCGTGGCCGTTCTTATTGAGG
TCGTTTTGTGGGCGCTGTACCCGAATATTCCGCCGTGCGCCCTCTTTCGC
CCTCCACCCCGAGTAACTTTTCGGCTTAGAGCGTACTACCTATANTTAAT
TCCATANTTCCCCCGACTATTTATTATTACCGTCAGCGACGGACTACGTA
CATTAGCTATAGCCTTATATAATGATGTTAATGTTCGCGAGGTACAGGTT
CGTGAGTAGAAGATAAATAATAAAGAATAACGAAAGAACACATGAAGCGC
CGGGCGTAACGGAAGGATGAGTGATTACATATAAACATCCNTATTCCACA
TATACCACCTCCCTACCCCTATATTATTATCCATATTATATCAATATCAT
ACCCCTAATAATTCTTATACCCAATCACTTATACAATACCTTAATATTAT
AAATACAACCAGTAATTAACAGCAATGTAGTATAGAATCCGCGCTCGCAG
ATGCACATAAGAGAATAATATTATAAGCGATAGCCAGTTAACTAATATGC
GGGCGCGCTGGGTATGGGTACGCTCTTTTGCGGGTGCACGCTTAGTACCT
ACAGCACCACATGATGTATCCACCGTGATGATACCTACCATCCGATATCA
CGTAGATCGACGACCCGTACGCGCCTAGGATTACAGCCATAGCACTACAT
AAAGAATAATATCGAATACAGAACAGATATATATATATATACGCAAGACG
ATAGAAACAGCCTGAAATGCGGCGNGATGATATGTTTTCGCGTTGCGTAT
CGCGCAATATAACCGTAATATATATTTATGAATTATACGCGATGCGGCGG
ATAGCACGATTATTGTATAAGACCACGTAGATATATATATATCGTGATTA
CGACGCAGTGATATAAGATATATGCTGTATACTAGACGACTAAGTACAGA
GACGCCATTGAAGGCAATTGTGACGCGCACCCCCACTCTCATATACTTAC
CTCTATTATTTATACCCACCTCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_m08.b1 MSMg01no089_m08.b1 CHROMAT_FILE:
MSMg01no089_m08.b1 PHD_FILE: MSMg01no089_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:42 2005
         (628 letters)



>mm_chr2_45616661_45617689
          Length = 1029

 Score = 1093 bits (565), Expect = 0.0
 Identities = 616/635 (97%), Gaps = 8/635 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttataatgtagcttattttaaaatatcgttttatgggaaattctt-cccaaactcttaa 59
           ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| 
Sbjct: 877 tttataatgtagcttattttaaaatattgttttatgagaaattcttccccaaactcttac 818

                                                                       
Query: 60  aagtaatataaca-tatgtgattctaggtctgaactcaggttgttaagcatggctttcta 118
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aagtaatataacact-tgtgattctaggtctgaactcaggttgttaagcatggctttcta 759

                                                                       
Query: 119 tgtatgggaaataaataacattcagtcactcaacaaacagttattgaataattatcatat 178
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tgtatggcaaataaataacattcagtcactcaacaaacagttattgaataattatcatat 699

                                                                       
Query: 179 agaaagtattggtctttgtacatagaatgtactggtgaacaatttcttt-aatgaaatga 237
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 698 agaaagtattggtctttgtacatagaatgtactagtgaacaatttctttaaatgaaatga 639

                                                                       
Query: 238 acaaacctgaaaggccatcatgcaaaggctatataggaccagcccatgtatgttcatgta 297
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 638 acaaagctgaaaggccatcatgcaaaggctgtataggaccagcccatgtatgttcatgta 579

                                                                       
Query: 298 ctgtgagacacacctgagaaaataatataaagcaggggaggttcattttgtttcaagcat 357
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 578 ctgtgagacacacctgagaaaataatatgaagcaggggaggttcattttgtttcaggcat 519

                                                                       
Query: 358 tcagaacttccaacccttggctgcaggctatataatgctttgggacctgaaatgaaacaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcagaacttccaacccttggctgcaggctatataatgctttgggacctgaaatgaaacaa 459

                                                                       
Query: 418 aagatatagtacaagaaagattctagcttcattcaaaccaggaagcagaaagtaacaga- 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 458 aagatatagtacaagaaagattctagcttcattcaaaccaggaagcagaaagtaacagat 399

                                                                       
Query: 477 ---aagattccaagacaagaaactattccaacaacctggccctcacaatgtatttttcca 533
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agaaagattccaagacaagaaactattccaacaacctggccctcacaatgtatttttcca 339

                                                                       
Query: 534 gctaggactctatactaaaattctacctcctcaaattaaaccttcacctggagaccaagt 593
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 338 gctaggactctatactaaaattctacctcctcgaattaaaccttcacctggagaccaagt 279

                                              
Query: 594 cttccacacatctgcatatgagggccatatcctct 628
           ||||||||||||||| |||||||||||||||||||
Sbjct: 278 cttccacacatctgcgtatgagggccatatcctct 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space:   629742
Effective search space used:   629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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