BAC Information

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BAC

Clone NameMSMg01-090C17
Chromosome2 (Build37)
Map Location 125,375,746 - 125,376,030
singlet/doubletsinglet
Overlap genenone
Upstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
Downstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090C17.T7 (MSMg01no090_c17.b1)MSMg01-090C17.TJ (MSMg01no090_c17.g1)
ACCAG308470AG308471
length877779
length of high quality
(start - end)
54 (120 - 173)285 (135 - 419)
definitionCHROMAT_FILE: MSMg01no090_c17.b1 PHD_FILE: MSMg01no090_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:14 2005CHROMAT_FILE: MSMg01no090_c17.g1 PHD_FILE: MSMg01no090_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCGCGTACGTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTTTTGCACTTAATACTGGAAAGTTGCT
GGCTGGGATGACTGTTGTGGGTCACAGTCGGGGTGATTTTGCCTCTCATG
TCATTTGTCATTACCTGGAGATGGTTTTAGTTATGATCGAGATGGAGTTA
GTGCTTTTAGTTTTATATTACCCGCAGCAAATTATTTCTCATCGTACATA
CTTTGTCCTTGTTTTACTTCCTGCCTATCTTGTCCACTTTTTTGAGTTCT
AGTTGTAATGATTTATCTACTCGTTCTATGTCATGTTTTTTTTTTCTTCA
ATCAATAACTTTTAATATTTTATTTTTTTTTTTTTTCCCCCCCCCCCCCC
CCTCAATATTTATATAAATATTTTTTAATTTTTTTTTATCGATGTGTAAA
ATAAAAAAAAACAAAATCTCTCGTGGTGTTGGGTAATTAATATTCTTTTT
CTTCTCTAACTCACCTGATTATTGTATATGGCAGTTCCTTTCCCGTTGAC
CAGCAACCATACTTTCCTTCTTCCCCGTCCTCACATTTTTTTTCTCCCTA
TTCCACTACTCTGCCTTTATCGTCGCTGGTACAGCTTTATCTTTTGTGAA
TTGTATTCTCAAGTTTTTTTTTATTAATATCATTCACTATTTCTTTGTCT
ATTTCTTTTCTCTTATTATAGTTCTTATTTTTATCATGACTTTAGTTATT
CTTAATTACTAGCTATCTTTGCAGCGTCTTCCTACATATTAAGATATTTT
CTCAAGTTCGCTGATAGTTTAGTCCTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTATT
CTTNNCACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCATCCCCAGTCA
CAGGACAGCTGAAGCTGAAGAAGGTGTCAGTCGGTCCCTGGCGGCCTGTG
GGGAAGGAAGACAGGAAAAAAGTCACAGGTTCATCACAGTGAACCACACC
AGGCTTGGACGTAGTGTAAGGCCTGTGGTAGGCAGTACCCTACTGCAAAA
TACAGAATAAAAAATGGAAGTCCACAGAGGCAGAGTGTGATGAAACTCGC
CTGCTTCACACTCTTCAGGTGGCAATTTCTTGCTTAATCATGATTTGAAG
TTCTCTCTGTATGTCTCTCTTTGTTTCTCCCCNATCAACCAATACTTGTA
AATTCAATTCAAGAACACATCAAATCACAACAAAAATAACCCATCATGTT
TAAGTTAGTTTCACTCCAGACATGCAGGATGGTTTAACATATGTAAGTCA
AAAAATGTGGTATATCACAGAAATGAACTATTGGACAGAAATCAAGTGAT
CAACTCAGTACATATAGAAAAGGGTTTTGACAAAATCCATTATCCTTTCA
TTAATAAAAGCCCCCAAGAGTACCGGAATACTGTGAAACATTAATCTGCA
CTGGCTTATTTCTCCATTGCTGAAATTAAACACCGTTTCATGAAAATTTA
TTTACTGAGTTTAAGGCTCCCGCGGGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_c17.g1 MSMg01no090_c17.g1 CHROMAT_FILE:
MSMg01no090_c17.g1 PHD_FILE: MSMg01no090_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:15 2005
         (285 letters)



>mm_chr2_125375546_125376230
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcatccccagtcacaggacagctgaagctgaagaaggtgtcagtcggtccctggcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ctttcatccccagtcacaggacagctgaagctgaagaaggtgtcagtcggtccctggtgg 260

                                                                       
Query: 61  cctgtggggaaggaagacaggaaaaaagtcacaggttcatcacagtgaaccacaccaggc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cctgtggggaaggaagacaggaaaaaagtcacaggttcatcacagtgaaccacaccagac 320

                                                                       
Query: 121 ttggacgtagtgtaaggcctgtggtaggcagtaccctactgcaaaatacagaataaaaaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggacatagtgtaaggcctgtggtaggcagtaccctactgcaaaatacagaataaaaaa 380

                                                                       
Query: 181 tggaagtccacagaggcagagtgtgatgaaactcgcctgcttcacactcttcaggtggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaagtccacagaggcagagtgtgatgaaactcgcctgcttcacactcttcaggtggca 440

                                                        
Query: 241 atttcttgcttaatcatgatttgaagttctctctgtatgtctctc 285
           |||||  ||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcaagcagaatcatgatttgaagttctctctgtatgtctctc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)