BAC Information

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BAC

Clone NameMSMg01-090I14
Chromosome2 (Build37)
Map Location 65,657,726 - 65,657,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
Downstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I14.T7 (MSMg01no090_i14.b1)MSMg01-090I14.TJ (MSMg01no090_i14.g1)
ACCAG308741AG308742
length729723
length of high quality
(start - end)
256 (66 - 321)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no090_i14.b1 PHD_FILE: MSMg01no090_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:43 2005CHROMAT_FILE: MSMg01no090_i14.g1 PHD_FILE: MSMg01no090_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATAGTGAATTCCAAGAAACCCTCAATCTACAATGAGGAGGTGAAGTAAAT
TAACATGCCATTAACACCACCCTAGATGACAGACCTGTCCAAAGCACCAT
ACACCATAATGTCAAGATTTACAAACATTTGCCGAGAAAGCATGCAAACA
ATGTCACAGTTTCCAATGCAATGACAACAACATATAAATAAATAAAACCT
TTTTGGAGCTATAATTGTTAATATTGCAATTTCGAACATGATGACTGACT
GAATAGGAAAACTACCTGTCAGAGAGGCGCATGTATCATGACTAATCTCG
TGTTCAAAATATTTATCACAAACCGGAAAAAAATTACTAATACATTTGTG
AATCTGTCCTTAACACAAACCTTCTCTGTAAACTATGTCGCAGCCAAAGC
TATGTATTATCAACTTTCCCAGAAACAATCTTAAACAATAGGACTTTGAC
TCTTATTCCATTTCACCTGATCATCGTAATCAATTACAACTATTCTATAA
TATTTCTCTGACACATCTCAATTAACATCCTAAGACATCACTCTTCTTTC
ACTATATCTTCGAAATCTAGTAAACTAATGTTTAAAAAAATTAACTCAAT
CTAATAATAAATCTAGTAATTATATGTAATAAACTTTATCTTACCCCTGT
TCTTTCCTTAATAATATATTTTAATTGTC
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCGCATTCAAGAACACATCAAAACAATCATCCATCCTGAC
CAAGTAGGTTTCATCCCAGCCATACAGGGATGGTTCAATATATGGAAATC
CATCAACGTAATCCAGTATATAAACAAACTCAAAGAGAAAAGACACATGA
TCATCTCGTTAGATGCGGAGAAAGCATTTGACAAAGTCCAACACCCATTC
ATGATAAAAGTCTTGGAAAGAACAGGAATTCAAGGCCTATACCTAAACAT
GATAAAAGTAATCTACAGCATACCAGTAGCCAACATCAAAGTAAATGGTG
AGAAGCTGGATGCAATCCCACTACCATCAGGATCTAGACAAGGCTGTCCA
CTCTCTCCCTACCCATTCAACATTGTAATTGAAGTCCTAGCCTGAGTAAT
TAGACAACTAAAAGTAAATCAAGGTAATACTAATTGTAAAGTTAATAAGT
CAAAACATCACTTTTTGCGCAATGAATGATAGTTCATATAAGTGACCCTA
ATAATTCCACACGAACACTCCCAATCTTGATAAACCATTTCATAGGATTT
CCTGGATACTACATTATCTCAAAATATTACTGTTACTTTCTCTAAACTCA
TAATATATCTGCCCGATATTGAAATTAATATAATTATTCACCTTTCTCCT
ACTCCCCCTATATTATATATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i14.b1 MSMg01no090_i14.b1 CHROMAT_FILE:
MSMg01no090_i14.b1 PHD_FILE: MSMg01no090_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:43 2005
         (256 letters)



>mm_chr2_65657526_65658181
          Length = 656

 Score =  458 bits (237), Expect = e-133
 Identities = 249/253 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccctcaatctacaatgaggaggtgaagtaaattaacatgccattaacaccaccctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 453 aaaccctcaatctacaatgaggaggtgaagtaaattaacatgccattaacaccaagctag 394

                                                                       
Query: 61  atgacagacctgtccaaagcaccatacaccataatgtcaagatttacaaacatttgccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgacagacctgtccaaagcaccatacaccataatgtcaagatttacaaacatttgccga 334

                                                                       
Query: 121 gaaagcatgcaaacaatgtcacagtttccaatgcaatgacaacaacatataaataaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 333 gaaagcatgcaaacaatgtcacagtttccaatgcaatgacaacaacaaataaataaataa 274

                                                                       
Query: 181 aacctttttggagctataattgttaatattgcaatttcgaacatgatgactgactgaata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 273 aacctttttggagctataattgttaatattgcaatttcgaacatgatgactgactgaaga 214

                        
Query: 241 ggaaaactacctg 253
           |||||||||||||
Sbjct: 213 ggaaaactacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)