BAC Information

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BAC

Clone NameMSMg01-090P06
Chromosome2 (Build37)
Map Location 10,526,116 - 10,526,622
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090P06.T7 (MSMg01no090_p06.b1)MSMg01-090P06.TJ (MSMg01no090_p06.g1)
ACCAG309035AG309036
length692698
length of high quality
(start - end)
512 (45 - 556)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no090_p06.b1 PHD_FILE: MSMg01no090_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:17 2005CHROMAT_FILE: MSMg01no090_p06.g1 PHD_FILE: MSMg01no090_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTATTAGTCTTGTGTGTTTACATTGTGGAGATATATTTAAGTTT
AAACACACAAAGCTATCATCATAAAAAAAAATTTCTCCATGTTACCAAGC
AGCAGGTGTCACTAAGGTTTGCCCTGGGAATGACAATAACTCTTGTGATA
TTTGAGCTATTTTAAAATGCGTTGTTTAAGACCAGATGAACATTTATATT
GGCACAAGATCCATTTAAGTTACAATTCCCCAAACACTCCGCTAGCTGGC
ATTTCTAAATGTCTCTCCCACATAGTAAAACCTCCAATTTTTTTTGCAAA
TGTTTTGAAAAAAAAGTTTAGCATATTGTCCCCTTTGCTTTCTCATAAAT
TACAGTGGCTGTGAGAGGCATTTGGAATGGTGTAATGTGGGAATAAACCT
GTTTTGTTCTTTGTAACTTGCAAACAATGCTAATACTTATGAACAAATTG
ATCTGTTCCTTTTAAAGTAATGATAGCATCATATACCACTTATCAACTGG
ACCCATTTCAAGCAGACAACCTTCATGTGTAAATGGTCTAAGTTCACTTA
GATGAACTCAGTCCTAATAGTCCTTTGTTTATTCCCTAAGCTGAAATGAA
AATGTTTTATAAACCTTTAATACCCATCCCAATTGCCTCTTG
GCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGAAACAGTGCAAATATGAA
AGCATCTTCAATAAATGGAGCAACTCTAACTGGTGGTCTGTTTGTAGGAG
AATGAAAACAAATCCATATCTATCACCTTGCACAAAACTCAAGTCCAAGT
GGATGAAGGAGCTCAACATAAAACCAGATATACTAAATCTAGTAGAAGAG
GAAGTGGGAAAGAGCCTCAAACTCATTGGCACAGGGGAAATTTTCCTGAA
CAGAACCCCAGTGGCTTAGGCTCTAAGATCAGCAATTGATAAATGGAACC
TCATGAAGCTGAAAAGCTTCTGTAAGGCCCACGGACACTGTCAAAAGGAC
AACTTATAGATCAGGAAAAGATCTTTACTAAATCTGCACCCAATAGAGGG
TTAATATTCAAAATATAAACAGAACTTTAGAAGTTAGACTCAAAACAAAC
AAACAAACAAACTAACCAAATATCCCAATTAAAAGTGAGATATAGAGCTA
ACCAGAGAATTCACAATAGAAGAATCTAGAATGTCTGAAAAGCCCTTAAA
GAAATGATCCCAGTCCTTAGCCTTCAGAGAAATGAAAATCATAAGACCTG
AAATTCCACCTCACACCATTCAAAAATTGGCTGTGAAGCGTAAAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_p06.b1 MSMg01no090_p06.b1 CHROMAT_FILE:
MSMg01no090_p06.b1 PHD_FILE: MSMg01no090_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:17 2005
         (512 letters)



>mm_chr2_10525912_10526822
          Length = 911

 Score =  959 bits (496), Expect = 0.0
 Identities = 505/508 (99%), Gaps = 1/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctattagtcttgtgtgtttacattgtggagatatatttaagtttaaacacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctattagtcttgtgtgtttacattgtggagatatatttaagtttaaacacac 264

                                                                       
Query: 65  aaagctatcatcataaaaaaaaatttctccatgttaccaagcagcaggtgtcactaaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagctatcatcataaaaaaaaatttctccatgttaccaagcagcaggtgtcactaaggt 324

                                                                       
Query: 125 ttgccctgggaatgacaataactcttgtgatatttgagctattttaaaatgcgttgttta 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 ttgccctgggaatgacaataactcttgtgatatttgagctattttaaaatgcattgttta 384

                                                                       
Query: 185 agaccagatgaacatttatattggcacaagatccatttaagttacaattccccaaacact 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 agaccagatgaacatttatattggcacaggatccatttaagttacaattccccaaacact 444

                                                                       
Query: 245 ccgctagctggcatttctaaatgtctctcccacatagtaaaacctccaattttttttgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccgctagctggcatttctaaatgtctctcccacatagtaaaacctccaattttttttgca 504

                                                                       
Query: 305 aatgttttgaaaaaaaagtttagcatattgtcccctttgctttctcataaattacagtgg 364
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgttttgaaaaaaa-gtttagcatattgtcccctttgctttctcataaattacagtgg 563

                                                                       
Query: 365 ctgtgagaggcatttggaatggtgtaatgtgggaataaacctgttttgttctttgtaact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgtgagaggcatttggaatggtgtaatgtgggaataaacctgttttgttctttgtaact 623

                                                                       
Query: 425 tgcaaacaatgctaatacttatgaacaaattgatctgttccttttaaagtaatgatagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcaaacaatgctaatacttatgaacaaattgatctgttccttttaaagtaatgatagca 683

                                       
Query: 485 tcatataccacttatcaactggacccat 512
           ||||||||||||||||||||||||||||
Sbjct: 684 tcatataccacttatcaactggacccat 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space:   452302
Effective search space used:   452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)