BAC Information

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BAC

Clone NameMSMg01-090P21
Chromosome2 (Build37)
Map Location 94,339,088 - 94,339,378
singlet/doubletsinglet
Overlap genenone
Upstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
Downstream geneLOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090P21.T7 (MSMg01no090_p21.b1)MSMg01-090P21.TJ (MSMg01no090_p21.g1)
ACCAG309065AG309066
length720708
length of high quality
(start - end)
---293 (78 - 370)
definitionCHROMAT_FILE: MSMg01no090_p21.b1 PHD_FILE: MSMg01no090_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:20 2005CHROMAT_FILE: MSMg01no090_p21.g1 PHD_FILE: MSMg01no090_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAGTTTGTTATCCGCTGAACATTCAGGGAGCTCTTGCATGTA
TGGAGAAAGCAATGAAGGGGAAGTGGACGGAGCAGGAGTCAGTGCTGGGG
AAACTGTTTCATTTGTGTGGCTTCAGTGCTTCTAGTAATTGCCGGAGATG
CACTTGTTCTAGTGACGTCACCTTTCTCAGTGCTTACATGAATCCTGACT
GACTGATGATCCATTTTGGAGGTGAATGCTACTACCTAGGCTTTGCTCAA
ATCCTTGGACCATTTTGCTTCTAAGAGTTTTTCAAGGAAACCATCTCGTT
GCTAAGAGAGAATTTATTTTTTTCCCCCCCCCCCCCCCGTAAATTTACAA
TTGATAAGTAAAGATTCCTCCATGTCTCAAAAAAAAAAAAACGCCTACGG
CGGGCGGGGGCTATAACCCGTGCGATCAAGTCCCAGAAAGTTTTGATTGT
CTCTTTCTAACCTAGAAACGTCTTGATTTTCTGCTCCATTATTGATACAC
CCATTGCAATTTCATTCTTCTATTAATTTTTCACACAATACAAAACCTTG
ATGTCTGCCAATTCCTAATGTATCTATATGCTATCCTCCCCTGATATATT
TTTGTTTTATTATATAAACTCTCTATCCAAAACTCACCCAGAATAACACT
TTCCACCCCCCTTATTTATT
NCCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCCTGTCACCCTCAGATATCTT
GTCTGCAAATGAGTTTCAAGTAATTGCATATACATATGGCTTGCTTATAT
TTTTATTAATCTGATATATATTTACTGTCAGTTCTTTGCCACTGATCAAA
TCATTGTTTTAATATTTTTTCCTTCTTGCAGTGTATATATTATTTTATGT
CTTTTTATTGATTTTTTTTTCATGTAATGTATCCTGATCAGACTCTCCCC
TTCCTCTACTCATCCCAGTTCCTCCCTATCTCCTTTCTATTCTGGATCCG
CCCCCTTTCTGTCTTTCATTAAGAAACCAATAGACTTGTAATAGATAATA
ATAATAGCAATAATAATAATAATAATAATACATAGAATAGAATAATATTA
ATATAAATCATAAACTATCACATTGGAGTTAGAGGACACTAACAGAAAGT
AAAGAGCTCTAAGAGAATACTAGAGCCAGACTGTGTGTTATGAAAGAACA
TGATTATCTTTCTTTCAAATGTAACTGGATAATTTGACTTATGCCCAGAA
TGTAAGGATTCATGAATTCAAGGCAAGATCAATGCTCTGTACTAATGCCA
TTCTGGTCAATATAATTAAACTATTTAAAAAATTTAATGAGCATAAATCC
AAAGCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_p21.g1 MSMg01no090_p21.g1 CHROMAT_FILE:
MSMg01no090_p21.g1 PHD_FILE: MSMg01no090_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:20 2005
         (293 letters)



>mm_chr2_94338888_94339580
          Length = 693

 Score =  509 bits (263), Expect = e-148
 Identities = 285/293 (97%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgtcaccctcagatatcttgtctgcaaatgagtttcaagtaattgcatatacatat 60
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctctcaccctcggatatcttgtctgcaaatgagtttcaagtaattgcatatacatat 260

                                                                       
Query: 61  ggcttgcttatatttttattaatctgatatatatttactgtcagttctttgccactgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttgcttatatttttattaatctgatatatatttactgtcagttctttgccactgatc 320

                                                                       
Query: 121 aaatcattgttttaatattttttccttcttgcagtgtatatattattttatgtcttttta 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aaatcattgttttaatattttttccttcatgcagtgtatatattattttatgtcttttta 380

                                                                       
Query: 181 ttgatttttttttcatgtaatgtatcctgatcagactctccccttcctctactcatccca 240
           |||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttgattttttt--catgtaatgaatcctgattagactctccccttcctctactcatccca 438

                                                                
Query: 241 gttcctccctatctcctttctattctggatccgccccctttctgtctttcatt 293
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 gttcctccctatctcctttctattctggatccgccccctttctgtctctcatt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)