BAC Information

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BAC

Clone NameMSMg01-091A23
Chromosome2 (Build37)
Map Location 164,258,482 - 164,410,794
singlet/doubletdoublet
Overlap geneSdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a
Upstream geneGdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl
Downstream geneSpinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091A23.T7 (MSMg01no091_a23.b1)MSMg01-091A23.TJ (MSMg01no091_a23.g1)
ACCAG309116AG309117
length682691
length of high quality
(start - end)		439 (126 - 564)369 (129 - 497)
definitionCHROMAT_FILE: MSMg01no091_a23.b1 PHD_FILE: MSMg01no091_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:26 2005CHROMAT_FILE: MSMg01no091_a23.g1 PHD_FILE: MSMg01no091_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:26 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(164,410,356 - 164,410,794)(164,258,482 - 164,258,850)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGCGGAATTC
ATATAACTTCTGCAAAGATTCTAGAAGAACTTTAAGCAAGTGCATCCCTC
TCCTGAGTGGCCAGATTCTCCCACGCTTGCGGAGGCCCCGACCAGCATGT
CAGATCCCTTTCCCCACAGTCTGCACTGCGGGTACAGCGAGTCCACTGAC
GGCCTCTGGGGAGGGAACGTACTGGCGCCTGTCCAGAGATGCTTCCTGGG
CTGTTGGGGCAGCAGAGGCCGGAGCCACTGACAAACTCCTCCTGGTTTAA
TGCCTCCAAACAGGCTACTGCTTCCTAAAATGAGACTCTGGGGACTTCTG
CCATTCCTGGTCCCCTTCATCCTCCTGTGGAGCATCCAGGAACCTGAGCT
GGCAGAGGGTTTCTTTATCAGTAAGTACTGGGTCCAGTTCTTAGCACGGA
GAGAAGAAACTTGATGGGGTTAGAGAACAAAACACGCTGCAGGTGACAGT
CTCTCCCTCACCTCAGCCCCTGGCCCTGGTGGGTGATGTTTGGAGTCAGT
GTTTCCCCATATCCTGGAAAGATGGCCTGGCTGGACACAGCTCTTTGGTC
TGTGGTGATTAACTCCCCACCATTATAAAGAATGCTTCCTGGAGTGCTGG
GACTAGTGTGCATTAAATGGACCTGGGGATTA

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCGCACAGGGCCCGTGCCTG
TGGCTTTGGCTTGGCAGCTTATCCCCAGGCTTCTCCGTGGTTGTACCAAC
TGCCCTAGACGGCCGGCATGGTCCAACCCCCAACGCCTCGCTACAAATTC
CCTAGGGTTCAAAATCTGCAACGGCAAGGCCTCCATGGCTTACAGTGTGC
CAGGCCTTAACATGCACGCACTTGGGATGACGCAGACCCTTTTGGCGAGG
GTGGAAACCACAGCTCGGGAAGGCAACTCATTTCTCCTAAGGTCACACAA
GCAGAAGTGACCAATAAGACCGGCGGCTGGGCATGAGATCACCTGGGCTT
CTAGCCACAGACACAACATAGGAACACCTTTTATGCTTAGAGCTCCCAGC
CCAGCCCGCCCTGGACTAGACAGGAACCCTAACTGGGTGTGTCTAATCCA
GCTAGTGGTGGGGGCATGGCGAGATGGAGGAAAGGAGAGGCAGGTAGAGA
TACTCTGACCACCAAAGCCTGAAAGACTGGTCACACGCTGTTAAAATTCA
AACTCTTTCAGGGCAGGCGCTCGAGGTTTTAAAGCCTGGGGGCTTGGGAT
TCCAGCTCAGGGCCTGACCTTACCCCAAACCTCGCCCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_a23.b1 MSMg01no091_a23.b1 CHROMAT_FILE:
MSMg01no091_a23.b1 PHD_FILE: MSMg01no091_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:26 2005
         (439 letters)



>mm_chr2_164410156_164410994
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgcggaggccccgaccagcatgtcagatccctttccccacagtctgcactgcgggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cttgcggaggccccgaccagcatgtcagatccctttccccacagtctgcactgcgggtac 580

                                                                       
Query: 61  agcgagtccactgacggcctctggggagggaacgtactggcgcctgtccagagatgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agcgagtccactgacggcctctggggagggaacgtactggcgcctgtccagagatgcttc 520

                                                                       
Query: 121 ctgggctgttggggcagcagaggccggagccactgacaaactcctcctggtttaatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctgggctgttggggcagcagaggccggagccactgacaaactcctcctggtttaatgcct 460

                                                                       
Query: 181 ccaaacaggctactgcttcctaaaatgagactctggggacttctgccattcctggtcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccaaacaggctactgcttcctaaaatgagactctggggacttctgccattcctggtcccc 400

                                                                       
Query: 241 ttcatcctcctgtggagcatccaggaacctgagctggcagagggtttctttatcagtaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcatcctcctgtggagcatccaggaacctgagctggcagagggtttctttatcagtaag 340

                                                                       
Query: 301 tactgggtccagttcttagcacggagagaagaaacttgatggggttagagaacaaaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tactgggtccagttcttagcacggagagaagaaacttgatggggttagagaacaaaacac 280

                                                                       
Query: 361 gctgcaggtgacagtctctccctcacctcagcccctggccctggtgggtgatgtttggag 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gctgcaggtgacagtgtctccctcacctcagcccctggccctggtgggtgatgtttggag 220

                              
Query: 421 tcagtgtttccccatatcc 439
           |||||||||||||||||||
Sbjct: 219 tcagtgtttccccatatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no091_a23.g1 MSMg01no091_a23.g1 CHROMAT_FILE:
MSMg01no091_a23.g1 PHD_FILE: MSMg01no091_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:26 2005
         (369 letters)



>mm_chr2_164258282_164259050
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttctccgtggttgtaccaactgccctagacggccggcatggtccaacccccaacgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttctccgtggttgtaccaactgccctagacggccggcatggtccaacccccaacgcct 260

                                                                       
Query: 61  cgctacaaattccctagggttcaaaatctgcaacggcaaggcctccatggcttacagtgt 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cgctacaaattccctagggttcaaaatctgcaatggcaaggcctccatggcttacagtgt 320

                                                                       
Query: 121 gccaggccttaacatgcacgcacttgggatgacgcagacccttttggcgagggtggaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggccttaacatgcacgcacttgggatgacgcagacccttttggcgagggtggaaac 380

                                                                       
Query: 181 cacagctcgggaaggcaactcatttctcctaaggtcacacaagcagaagtgaccaataag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 cacagctcgggaaggcaactcatttctcctaaggtcacacaagcagaagtgaccaacaag 440

                                                                       
Query: 241 accggcggctgggcatgagatcacctgggcttctagccacagacacaacataggaacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accggcggctgggcatgagatcacctgggcttctagccacagacacaacataggaacacc 500

                                                                       
Query: 301 ttttatgcttagagctcccagcccagcccgccctggactagacaggaaccctaactgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatgcttagagctcccagcccagcccgccctggactagacaggaaccctaactgggt 560

                    
Query: 361 gtgtctaat 369
           |||||||||
Sbjct: 561 gtgtctaat 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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