BAC Information

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BAC

Clone NameMSMg01-091D20
Chromosome2 (Build37)
Map Location 180,334,368 - 180,334,488
singlet/doubletsinglet
Overlap geneCol9a3
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr
Downstream geneTcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091D20.T7 (MSMg01no091_d20.b1)MSMg01-091D20.TJ (MSMg01no091_d20.g1)
ACCAG309244AG309245
length805782
length of high quality
(start - end)
121 (183 - 303)---
definitionCHROMAT_FILE: MSMg01no091_d20.b1 PHD_FILE: MSMg01no091_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:41 2005CHROMAT_FILE: MSMg01no091_d20.g1 PHD_FILE: MSMg01no091_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCTTTAACNNNCTTACCTCCATAACCCTNTTCTNCTTCCTTNCCT
TCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGXXXXXXXXX
XXXXXXXXXXXXXGCCACTCCCATTTGGGGATCATCTAGGAACACAGCGG
CACAGTAGCCTCCAAGTGACACTCCGTCCCCTCCCTCTGCACCGACCTAA
GAGCTTTATAGAGTGGCTGTGGCTAGCTGAGCAGCCTCTTGACTCCATGT
GAGTACTTCCTCATCCATTCTCCAGAAAGGAGGCCCACTATTGGTACCCT
CCACGGACACCTGCCAGTGGGTGAAACTTTCATATGAAGCTTTAAGAGCC
TCAGAGCCAGGGTGCTCAGCTACAGCAGAGTTTAAAGTCCTGGGCCTCCC
CGTCGAACATGGTCGTCCATGTATGTTGTGAGGGAGCCTGCTGCCATTAC
AGTTGAGCTAGGTTTTGGCACCCTTGGTAGTCTGAAAACAGCTCCAGGCA
TTTCTTAATCGAGGCTTTCTATACTCTCTTATGGTGCTCCTATCTGAACC
ATCGAACCGACTGTAACTTTGAACGTACCGCGTAGTAATATCCTTCCCCT
TCCTACGACGTTATTTCGTTGTTGTGGAACTTTCCACCCTTTAATGCTCC
CCCCTCTGTCCCCCCCAGGCCTATACCCTTCTTTTTTCCTTGTCCCCCAC
TCAACTGCGCCGTAATCCCCTTCCTATCCTCTCTTCCAATGCCATCGGTC
CCCCCCTGATTGTCCTCTTCCCCCTCCCCCTTATCTTCCCCTCGCCCCCG
CCTTN
TCGATGAAGTGGGAGGCCTGGCGGCGCCTGGCTTTCTCATCACGTGACCT
ATAGAAGGTCTTCCAAAAAACCCCTTCTCACTGACATGAGGGAAGCTGCC
AGTCTGCAGTGGGGTGTTGCACCGGAGACTCGCTGCGCTAGAGCGAGAGG
GAAGATGGGAGTGGACTTGGGGCGCACGAAAGCGTGAGGGGGGGGGCCGC
TAGAGCTGTCGTCCCAGGTCCAAAGGTCTGCTATCATCCTTTTGTGCGAG
CCTCTTGTTCTTCCGTTCATCGCCTGATTCCCCCGCTTGAGCTGCCCCGC
CGCACACACTTACGCCCCCACCGTTTTTTTTTTTTCCGCCCCTTGTACTC
TTCGACTGTTCTTTTTTTTTTTTTTTTCCCCCCCCCCTCCCGGACCCTTT
CCTATTCCTTCTCTCGTCCCCCCTCTCCTACTTAAAAAAAAAAACACTCC
CGGCGGGCCGGGCCTTGTCCCCTTTTCCTCCCCTCCCTCCACTCTCCTCC
CTCTGGTCTCGTCTTCGCCTCCCCTCTGCTTTTCCCTCCCTATTTACTTA
CCCCCCCACCTCTTTCTCCCCCCAATTCCCCCTACTTTCCCGCACCTCCT
CTCTCCTCCTTCCCTCTCACGTCCCTCCCCCTCCCTCCCCCCTTTTTTAC
AACCCTTTTCCCTCCTTCCCTCCAACCTCTCTCCCTCCGTTTTCCCTTCC
TTTTTTTTTTTTTCTCTTCCTACCTTCCCGCTCTACTCTTTTTTGACGCT
CTCCTTTACCTTCCCTCCCTATTGCCCCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_d20.b1 MSMg01no091_d20.b1 CHROMAT_FILE:
MSMg01no091_d20.b1 PHD_FILE: MSMg01no091_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:41 2005
         (121 letters)



>mm_chr2_180334168_180334688
          Length = 521

 Score =  195 bits (101), Expect = 6e-55
 Identities = 116/121 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctctgcaccgacctaagagctttatagagtggctgtggctagctgagcagcctcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctctgcaccgacctaagagctttatagagtggctgtggctagctgagcagcctcttga 262

                                                                       
Query: 61  ctccatgtgagtacttcctcatccattctccagaaaggaggcccactattggtaccctcc 120
           ||||||||||| ||||||||| ||||||||||||||||||||||| ||  ||||||||||
Sbjct: 261 ctccatgtgagcacttcctcacccattctccagaaaggaggcccattagcggtaccctcc 202

            
Query: 121 a 121
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)