Query= MSMg01no092_n10.b1 MSMg01no092_n10.b1 CHROMAT_FILE:
MSMg01no092_n10.b1 PHD_FILE: MSMg01no092_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:50 2005
(504 letters)
>mm_chr2_121295952_121296855
Length = 904
Score = 814 bits (421), Expect = 0.0
Identities = 494/539 (91%), Gaps = 36/539 (6%)
Strand = Plus / Plus
Query: 1 gtctaaggagcatatgacagccattctccaaccacacagtcaacctctcactgctttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctaaggagcatatgacagccattctccaaccacacagtcaacctctcactgctttctt 260
Query: 61 ataaagtctacggtgtgagaagttgttttatgaataccaacaccaggacatcaagaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagtctacggtgtgagaagttgttttatgaataccaacaccaggacatcaagaggta 320
Query: 121 ccttggggaacaatgaggtagaggaatgtgaatagtcaaagtgcagaagccacccccacc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttggggaacaatgtggtagaggaatgtgaatagtcaaagtgcagaagccacccccacc 380
Query: 181 tccatacattcatgctatggcatcttaacactcagtggggatttaacgacaatgtccccc 240
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 381 cccatacattcatgctatggcatcttaacactcagtggg-atttaaggacaatgtccccc 439
Query: 241 ataggcttggctctttgaccgagtgggtctcagctctttgggtagggataggaagtacag 300
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataggcttggctctttgatcaagtgggtctcagctctttgggtagggataggaagtacag 499
Query: 301 ccttgctagaggaagcatgttatcaggggtgacctttgaggtttcaaagccatgcaccat 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccttgctagaggaagcatgtcatcaggggtgacctttgaggtttcaaagccatgcaccat 559
Query: 361 tcctactgattcctattgtagtgcctgagtgtcctctgtctgtctgtctctctgctccct 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 tcctactgattcctactgtagtgcctgagtgtcctctgtctgtctgtctctctgctccat 619
Query: 421 ggttg----------ta----------gt--------------gccatgccttgctctac 446
||||| || || |||||||||||||||||
Sbjct: 620 ggttgcacttcaacatatgagcccccagtttcctcttcctgctgccatgccttgctctac 679
Query: 447 cttcctgcactccaattctctg-aatcataagcccaaataaaactctgccttttataaa 504
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttcctgcactccaatcctctggaatcataagcccaaataaaactctgccttttataaa 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_n10.g1 MSMg01no092_n10.g1 CHROMAT_FILE:
MSMg01no092_n10.g1 PHD_FILE: MSMg01no092_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:50 2005
(291 letters)
>mm_chr2_121436100_121436790
Length = 691
Score = 561 bits (290), Expect = e-164
Identities = 290/290 (100%)
Strand = Plus / Minus
Query: 1 cagggatcagattcaggtcatcagccttggcagcaactcactggccctctgctccctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagggatcagattcaggtcatcagccttggcagcaactcactggccctctgctccctcct 431
Query: 61 tccactctctaaccacccgtctgccacacatctgtcataggtggccgctaagctaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tccactctctaaccacccgtctgccacacatctgtcataggtggccgctaagctaaagag 371
Query: 121 cctttcaaagttgccctaaccctggaagagatgagacagctcccccagcccccatgtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctttcaaagttgccctaaccctggaagagatgagacagctcccccagcccccatgtcag 311
Query: 181 gcatggagcctgcatttgtaaccagagtctgccggggcagtgtaggaagtgtctggttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcatggagcctgcatttgtaaccagagtctgccggggcagtgtaggaagtgtctggttct 251
Query: 241 acagctaagaaggaagagggacactgctgaacacagctgaaaaaactgac 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acagctaagaaggaagagggacactgctgaacacagctgaaaaaactgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
