BAC Information

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BAC

Clone NameMSMg01-092P05
Chromosome2 (Build37)
Map Location 162,281,386 - 162,281,717
singlet/doubletsinglet
Overlap genePtprt
Upstream geneLOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P05.T7 (MSMg01no092_p05.b1)MSMg01-092P05.TJ (MSMg01no092_p05.g1)
ACCAG310515AG310516
length894676
length of high quality
(start - end)
---334 (127 - 460)
definitionCHROMAT_FILE: MSMg01no092_p05.b1 PHD_FILE: MSMg01no092_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:59 2005CHROMAT_FILE: MSMg01no092_p05.g1 PHD_FILE: MSMg01no092_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCCGGAATTCAATACCTTCCTCGGTCTACACCAGTGAGTGCC
AGACCCTGCCTAGGCTACTCGGTNGAGATTTTTCGCCTCCCGATAGGAAG
GAAGGATAGGTATGGGAGGCGCCTAGGTCATGCCTTTTTCTTCCCCTCCT
TCTTCCTTCCCTCCTCCTTCTCTCCCTTTTTTCTTTTCTTTTCTCTCCTC
TTCCCTCCCCTCTCTTCCTCTCTTTTTCCTCTCTCTTTCCTCCTCTCTCT
TCTTTTTTCTCCTCCTCTTTTTTTCCTCTTTTCTCCTCTCCTTATCCTCC
TCCCCCCCCCCTCCCCCTCCTCTCTCCTCTCTCCCCCTCCTCCTCTCTCC
TCCCCTCTTCTTCTCCCCCCCCTTTTTTCTTTTCTTTCCCCCCCCCTCCT
CTCCCTTTTCCCTTTCTTTCTCACCTCCCTTCTCTCCTTCTTCTCTTCCT
CCTCCTCTCCTCTCCCACTCCTTTTTCTCTTTCCTCCCTCTCCCCTCTCC
TCCCCTCCCCCTCTTTTTCCCTTCTCTTCTTCTTTCTCTCTCTCCCTTCT
TTTTCTCCCTTCTTTCCCCCCTTTTTTCTTCTCTTCTCCCCTTTCTCTCC
TCTCTCTTCTCTCCCTCTTCTTTTCCCTTCCTTTCTCCTCTTCACTCCCT
TCTTCCCTCCTCTTTTCTCTCTCCTCTCCTCTTTTCTCCTCCCTCCCTCT
CTCCTCCTCTCTCCTTCCCCCTCCTCCTCTTTTTCCTTTCTCTCCCCCTT
TCCTCTCTCCTCCCCCTCCTCCTCCTCTTTTCTCTCCTCCCCTTTTCTCC
TCCTTCCTCTCCTTTCCCCTCCCTCTTTCCCTTTCTCCCTCTTT
NTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTAGATGAATATTTATGTT
TTTTTAAGGAAACATATGTATATCTAAGTTAATAGAAGGAAAGAAAGCTA
AGATTTATGACTTCTGTTCCCTGGATGGTAGATTATATGTAACTGCTTGG
AAGGAACTTGCAACCTATTTTGCATATTTGCTAAAGCAAATACTTTTCAG
TTAGGGAGTCTAATAAAGGATAAAATAAAAACAAATGTTAGTGAAAGTGA
AAGAGTAAGCTTGGGCTAGACGCATCTGCGTGGAAAGAACCCGAGACGTC
CTAGACGAGCAAAGACATTGACCTTGTTGGCACTTTTGAATCTATTTTTG
AAATGCTTGCAAGTACAGGTTCTTGCAAGATTGTTCTGAGGATGAATTCA
GAGTACAAGAAAAGAGTGGGACTGAAAAGACTCAGTAAATATTGCTAGAA
TCTTCTGTTCCCTTCTTAGTCTTGTATAAAATGACTGATTTGGATCTGCT
GATCTTAAATGGCCTTCCCAGTTGCTCCTGCAATCTTCTCTTTATTCTAT
GTGACCACAGTCCTCTTGCTTGATCCTCCCCATATGAACGCTAACCGGCT
GCCTGTCCAGGCTAAATCAGTTGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p05.g1 MSMg01no092_p05.g1 CHROMAT_FILE:
MSMg01no092_p05.g1 PHD_FILE: MSMg01no092_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:59 2005
         (334 letters)



>mm_chr2_162281184_162281917
          Length = 734

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttaatagaaggaaagaaagctaagatttatgacttctgttccctggatggtagattatat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttaatagaaggaaagaaagctaagatttatgacttctgttccctggatggtagattatat 475

                                                                       
Query: 63  gtaactgcttggaaggaacttgcaacctattttgcatatttgctaaagcaaatacttttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtaactgcttggaaggaacttgcaacctattttgcatatttgctaaagcaaatacttttc 415

                                                                       
Query: 123 agttagggagtctaataaaggataaaataaaaacaaatgttagtgaaagtgaaagagtaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agttagggagtctaataaaggataaaataaaaacaaatgttagtgaaagtgaaagagtaa 355

                                                                       
Query: 183 gcttgggctagacgcatctgcgtggaaagaacccgagacgtcctagacgagcaaagacat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcttgggctagacgcatctgcgtggaaagaacccgagacgtcctagacgagcaaagacat 295

                                                                       
Query: 243 tgaccttgttggcacttttgaatctatttttgaaatgcttgcaagtacaggttcttgcaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgaccttgttggcacttttgaatctatttttgaaatgcttgcaagtacaggttcttgcaa 235

                                           
Query: 303 gattgttctgaggatgaattcagagtacaaga 334
           ||||||||||||||||||||||||||||||||
Sbjct: 234 gattgttctgaggatgaattcagagtacaaga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)