BAC Information

Click to search

BAC

Clone NameMSMg01-093A01
Chromosome2 (Build37)
Map Location 169,086,298 - 169,086,622
singlet/doubletsinglet
Overlap genenone
Upstream geneKcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093A01.T7 (MSMg01no093_a01.b1)MSMg01-093A01.TJ (MSMg01no093_a01.g1)
ACCAG310555AG310556
length1,2371,220
length of high quality
(start - end)
276 (67 - 342)329 (69 - 397)
definitionCHROMAT_FILE: MSMg01no093_a01.b1 PHD_FILE: MSMg01no093_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:03 2005CHROMAT_FILE: MSMg01no093_a01.g1 PHD_FILE: MSMg01no093_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTATAACTTA
CTTTAAATCTTTAAGTTGGCCTTGCAATGTGTCGCTCAGATGACTGCCCT
GTGGTTTGCTCTGCCCGGGTGGATTCGGGCAGTCTGTATCCTTATGCTGC
TAGCTTATTTAATTTAGCCCTGGAGGTTCATCTACAGTGTAGCATGGGGC
AGGTTTGAGGTTAAAAATTATTTCACCACCAGATGGTGGTGGCGCGCCCC
TTTAATCCCAGCACTCAGGGGACAGAGGCAGGCAGATCTCTTTGACTTTG
GGGACAGCCTGGTCTACACAGCAAGTTCTGACACAGCCAGGGCTACACAG
AAAAATCCTGCTTGAAAAATGAAGCAGCAACCACTTTTTTTGAAATTACT
CGTTGTATAAGTCTGTATTTTCTACGTCCATCCATTATCAATCATACCAG
GTTGCTCTTAATTCTTGCTCACCGTATTATATAATATATTATCTATTACA
TTGTGTACTATAGTAATGCCACACCTACACTTATTGTTCTTTATCATTCT
GTTTTTCGATCTTGTTTAATAATATCCTTTGAATGTGCATTTCTGCATCA
TATAGTTCCTCCGTTTCTTATTGCTCTATTGCTTTATTTCTTCTTTTCTT
GTTATTTTTTTTCTTTCCGTCTTTTTTGTTTATTCTCCTATTTTTTTTCT
GTTTTTTATTTTTTTTTTCTCCTTTTTTTCTTTTTTTCTCTCTTTATTTT
TTTTTCTTTTACTCTTCTTCACTTCTCATTTTTTTTTTCTCCCGTTCTCT
TCTTTCTTTTCTTCTTTTCTTCTTTCTTTCTACCTTTATTCCTTTTCTTT
CTTACTCTTCTCTATTTTCTTTTCTTTTTTCTTTCATTTTCTTTTTCTCT
CATCCTTTGTTATCTTTCTTATCTTCTTTTCTATTTCCTTTCTTTTTTTC
TTTCCTTCCTTCTTTCTTTTTTTCTTCTCTCTTATTCTTTTTTCTTTATC
CTCTTTTTTTTCTTTTCTTCTTTTTCTTTTTCTTTTTTTTTTTTTTTCTT
TCTCATTTTTATTTCTTTCTTTCTTCCTCTTTCTTCTTCTTTTTTCTATT
TTTATTATCTTCTCTTTTTTTTCTTTTTATTTTTTCTTTTCTTTTTATCT
TTACTTTTTTTTTCTTTATTATTTTCATTTCTTTTTATACTTTTTTCTTC
TTTTCTTTATATCACTCTTTCTCCCTTTTTACTTTTA
NNNNGGACGATTGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTTCAGCTACCTCTCCAGCACCCCGTCTGC
CAACACATTCCCTTGATCCACACCGTGATGACAATGGACTAAACTTCTAA
ACCTGTAAGCCAGCCCCAGTTAAGTGTTTTCCTCTATAAGAGTTGCCTTG
GGCATGGTGTCTGTTCACAGCAATAGAAACCCTAAGACATTTTCCATTTT
GGAATGACTCGCCATGCAGGAGCACATGACTATGCAGTGCAGCTGAGGAC
CAGGGGTTTCAGAGTCTTTCCTTGTGGCTGTTTCACACGACCTGAGATCC
CTTATGTTCACAGTGGCTGCATTCCAGAGCAAGTGGATCCAGCTTGGATT
ATTCTGTGCTGTCCCCATGACTCAGACTCGGATGTCATCTACTCATCAGT
ATATGACAGCATTGCAGGGTGTAGGAGGAACCCAAGCCCGAAAAGGTGTG
TGCGCTCGTCATTGTCCTCTGCTCGTTCTCAGTTACGCCCGGTGTCTCAG
GGGATGCATCTGTTACTACCCATGTGCCCAGGGAGCCATAATAACGGATG
AAAGGTTCCAAAGATGTCTATGTTTGTCAAGTCCTGCTCTCACAAGCTGA
TCACCTGTACTTACCACTTATTCCCCTTTTAAAATTGTCTATGCCTTGTG
CTGCATATTTTTCTACCCCATATTCCGTAATTTATTACATTCGTCTTTCT
CCTTTATTTCTTTCCTTTATTTTTTTTTTCCTTCGTTTTTGTTCTTTTAT
ATTTCTTATTATATCTTTGTTTTCTCCCTTTTATTTTCTTTTTTTTTTGT
TTTTTTTTTTTTTTTTTTATTTCTCTTCTTATTTTTTTTCTCACTTTTTT
TCTTCCGTTTATTTTCTTTATTTTTTATTTCTTTTTTTTTTCTTCCTTCT
TTTTTTTTTACCATTCTATATATTTTTTATTCTTTTTTATTCTTTTTCTN
TTTTTTCTTCTCTTTTTTATTTCTTTTACTATCTCTTTATTTTTTTTTTT
TATTTTTCTTTTCTCTTCTTATTTTCTTATTCTCATTTTTTTTTTTTTTG
TTTTCTTTATTTTTTTTTTCTTGTCTTTATTTTCTTATCATCTTTCTATC
TCTTTCATTTCCCTCTAACCTTTATTATTTAATATCCTTTTTCTAATTTG
CTTTCTATATATATTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_a01.g1 MSMg01no093_a01.g1 CHROMAT_FILE:
MSMg01no093_a01.g1 PHD_FILE: MSMg01no093_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:03 2005
         (329 letters)



>mm_chr2_169085931_169086659
          Length = 729

 Score =  582 bits (301), Expect = e-171
 Identities = 319/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcagctacctctccagcaccccgtctgccaacacattcccttgatccacaccgtgatgac 64
           ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| 
Sbjct: 692 tcagctacctctccagcaccccgtctgccaacacattgccatgctccacaccgtgatgat 633

                                                                       
Query: 65  aatggactaaacttctaaacctgtaagccagccccagttaagtgttttcctctataagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 632 aatggactaaacttctaaacctgtaagccagccccagttaagtgttttcctttataagag 573

                                                                       
Query: 125 ttgccttgggcatggtgtctgttcacagcaatagaaaccctaagacattttccattttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgccttgggcatggtgtctgttcacagcaatagaaaccctaagacattttccattttgg 513

                                                                       
Query: 185 aatgactcgccatgcaggagcacatgactatgcagtgcagctgaggaccaggggtttcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aatgactcgccatgcaggagcacatgactatgcagtgcagctgaggaccaggggtttcag 453

                                                                       
Query: 245 agtctttccttgtggctgtttcacacgacctgagatcccttatgttcacagtggctgcat 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 452 agtctttccttgtggctgtttcacacgacatgagatcccttatgttcacagtggctgcat 393

                                    
Query: 305 tccagagcaagtggatccagcttgg 329
           |||||||||||||||||||||||||
Sbjct: 392 tccagagcaagtggatccagcttgg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)