Query= MSMg01no093_a03.b1 MSMg01no093_a03.b1 CHROMAT_FILE:
MSMg01no093_a03.b1 PHD_FILE: MSMg01no093_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:04 2005
(530 letters)
>mm_chr2_46848410_46849337
Length = 928
Score = 862 bits (446), Expect = 0.0
Identities = 509/532 (95%), Gaps = 6/532 (1%)
Strand = Plus / Plus
Query: 1 ataacacaaatcttctgataaacgaagtaagcaataatgaggaagacacattgaggtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ataacacaaatcttctgataaacgaagtaagcaataatgaggaagacacattgaggt-gc 259
Query: 61 tctcatggtgaagaatgcaaattctcatttttgtcgtccaacagctgctcacaacattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctcatggtgaagaatgcaaattctcatttttgtcgtccaacagctgctcacaacattaa 319
Query: 121 aagagaaacatttttaataagttttaagagaagtagagccaaaattcaatttagtctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagagaaacatttttaataagttttaagagaagtagagccaaaattcaatttagtctaca 379
Query: 181 gcccttccaatgaccacagagctggtccaggctacatcaggacacgcttgagagctattt 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcccttccaatgaccacagcgctggtccaggctacatcaggacacgcttgagagctattt 439
Query: 241 tgtggtaaacaaagcaaaacatatgtcattgacatttatttagaga--ttagctctaaac 298
|||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||
Sbjct: 440 tgtggtaaacaaagcaaaacatatgtcattgaaattta---agagagattagttctaaac 496
Query: 299 ctcagcgctacagagtgaacagcctgaagtttttctcccagctaaccattctattgtttt 358
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 497 ctcagtgctacagagtgaacagcttgaagtttttctcccagctaaacattctattgtttt 556
Query: 359 tccacagaggaaagattaatagctgaaattcatgaccttcgactcctacacaaatcctaa 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 557 tccacagaggaaagattaatagctgaaattcatgacctttgactcctacacaaattctaa 616
Query: 419 gaagtaaaatggaattattaatactggtcaacgctaacttttttatcaagcagaatactg 478
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||
Sbjct: 617 gaagtaaaatggaattattaatactggtgaaagctaacttttttataaagcagaataatg 676
Query: 479 agcatatctcatatatatacacacatatatatatatatatatatatatatat 530
||||||| || |||||||| | | ||||||||||||||||||||||||||||
Sbjct: 677 agcatatatcctatatatatatatatatatatatatatatatatatatatat 728
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 503 atatatatatatatatatatatatatat 530
||||||||||||||||||||||||||||
Sbjct: 722 atatatatatatatatatatatatatat 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 21
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 530
Length of database: 928
Length adjustment: 10
Effective length of query: 520
Effective length of database: 918
Effective search space: 477360
Effective search space used: 477360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no093_a03.g1 MSMg01no093_a03.g1 CHROMAT_FILE:
MSMg01no093_a03.g1 PHD_FILE: MSMg01no093_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:04 2005
(333 letters)
>mm_chr2_46975784_46976515
Length = 732
Score = 600 bits (310), Expect = e-176
Identities = 322/326 (98%), Gaps = 1/326 (0%)
Strand = Plus / Minus
Query: 8 aaattcatttaaagtcaaaaaataaaggcaaggcccttataaccaaatttgcactaataa 67
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 aaattcatttaaagtcaaaaaataaaggcaaggcacttataaccaaatttgcactaataa 562
Query: 68 ttttggattaattaattaattaattaatttatcaaacaaaaatgagcaccacggcactgg 127
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 561 ttttggattaattaattaattaattaatttatcaaacaaaaatgagca-gaaggcactgg 503
Query: 128 attttatggatcatctaagagtaaatgatcctcttgatgtgaaactcatgaattggttct 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attttatggatcatctaagagtaaatgatcctcttgatgtgaaactcatgaattggttct 443
Query: 188 agcagatgaatatgttagcaagtagaatatgccctgtacgatatttctgacatcactatg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agcagatgaatatgttagcaagtagaatatgccctgtacgatatttctgacatcactatg 383
Query: 248 gttctatttctagcttagttgattaattaattgattcattggaaatatactgaaagtgta 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttctatttctagcttagttgattaattaattgattcattggaaatatactgaaagtgta 323
Query: 308 atgtaaaactactaatactatgtgtt 333
||||||||||||||||||||||||||
Sbjct: 322 atgtaaaactactaatactatgtgtt 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 732
Length adjustment: 9
Effective length of query: 324
Effective length of database: 723
Effective search space: 234252
Effective search space used: 234252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
