BAC Information

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BAC

Clone NameMSMg01-093C07
Chromosome2 (Build37)
Map Location 61,025,366 - 61,155,262
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093C07.T7 (MSMg01no093_c07.b1)MSMg01-093C07.TJ (MSMg01no093_c07.g1)
ACCAG310662AG310663
length1,1221,211
length of high quality
(start - end)
181 (21 - 201)281 (117 - 397)
definitionCHROMAT_FILE: MSMg01no093_c07.b1 PHD_FILE: MSMg01no093_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:22 2005CHROMAT_FILE: MSMg01no093_c07.g1 PHD_FILE: MSMg01no093_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,025,366 - 61,025,546)(61,154,983 - 61,155,262)
sequence
CTCTGAAAAAAGACCCGCACTTACTGAGTGACACCTTGGGAACGGCTCTT
TTATATGAAATACATCCCAAGGCTCCCTGGATGCTTAACTCTAGGTCTCA
TTGACTTGCACCATGAGCCATCTCATTCATATTTGAAAGAAGCAATGAAG
ATCGAATTAGCTCTATAATTTAAACAATTTATTGGTATTTCTGAATATTA
ACTCACCTGAGTCACTCTGTTTCCTTGAATATTAATAGGTCAGCAGCGTT
TAATTACTTGCTGAGTATGCTTCTTCTGTTAGGAAAACCCTCTTTTTTTA
TAAGAATCCCGGAAAAAAAATCCGACTGTCTAGGTTAAACACCATGTTTT
CTCCGCCCCGACTCGTAATCCACATAACATGACATGAACAGACCAGAGTT
TTTATGTATTGTTAAATTGCTAGTATTCTACCTTCCACATCGTATTTATT
TGTTAAATTGTTTTTGTTCGTTCTCATTTTGGTTTTTTCTCATTTCTTTT
TCCATGTTGTGCTTGTTTTATTGTCCTCTCTTCTTTTTTTTTCTCTTTAT
TTATTATCATTCGTTTCTTATTTTGTATTTTTTCTTTCTTTCTTTTTTTT
TTTTTATCTCATTTTTTTGCTATTTTGTTTTTTTTATTTCCCTTTTTTTT
CTTATTGTTCTTATCATTCCTTTATTTAATTTTTTTTTCTCTAATTCATT
CTACATTTTTTTTCCCTTTCTTTTCTTCTTTCTTCTTTTTTATTTCATTT
ATCTTATTCTTATTATCTTTTTCTTTCCATCTTCTTGCTTCTTTTTTTCT
ATTCCTTTTTTTTTCTCCTTCTTTTTTTTATATTTTTTTCTATTTATTTT
TTCTTTTTTAATTTTTTTTTCTTTTTTTTTCTTTTTTCCTCATTTTATCT
TTTTATTTTTATATTTCCATCTCTTTATTCTTTTTTTTTTTTCTTCTTTT
TCTTCTTCGTTTTTTTCTTTCTTTATTACTCTTTTTCTTTTTTTTCATCA
TTACATTCTNCTATACTTATTCTAATTTATCTTCCTGCTTGTTGTCTCTC
TTTTTTTTTTCTTTTATATTTATTTGTATATTTTTTTTTTTTATTTTTTT
TGTCTTACTTTCTCTATTTTTT
TTTTGCTGCAAGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTCCTTAACTGTTTCTTCCAGGGCAGCAGC
AGACAGTGCCTTTCCTCTTGGTACACACCATTCAATTTTCACTTATGGGC
GTACAGATTTCAGTTGGGCATTGACTTCACGGAAAATACTGAAAGTGACC
TCAGGTAGACTGGCTTTGGAGATCACGGTCCTAGTCAGGTGTCGTTGCTT
GAGTTGTCTAATCTAATGGCTTGTTAAATCTGGAAAGCATTTAGAAGTGT
ATGCCAGCTTTTAGAGGAACAACAAGGCCTAGTGAAGTGGAGTGTGATCA
TGAGCAAAGGCAGACATTTGCCTGGTACTTTCTACAGGATGCAAAGTTTT
GTGTTCACACATTGCTTCCACTCCTGACAGCAGAGGTCCCGTGGCCCCTA
TATCAATCGCCCCCCCTATGTGCTTTTGCACCACATCCCTCTCTCTTTCC
AGAAGAACTCTCCTCTGCAATTCCTTCCTTCTCCCTTCCATTCGGTCATC
ATTTAGTTAATCTAGTTATTCCTATTTGCCTTCTCAGAGCCATGATATAT
TCGCCTCTTACATGACCCGTTCTATATCCATCATTATAGTCTTCTTCTAT
CTTCTCCCTTAATTTTTTTCTTCCCTTGTATACTATCCATTATCCTATTC
TCCTTTTTTTTTTTTTTTTTTTTACTTTTTTCTTCCCTTGTTTTTTTTCT
TTCTTTTTTCCATCGATCCCTTTTTCTTTTACTCTATTTTTCCCTCTTCT
CTTTTTTTTTAGTCCTCTTATTTTTTGTTTTTTTCCTTTTCCTTCTCTTA
TTCTTTTCTTTTTCTTTTATTTTCTTTTTTTCTTTCTCTTTTACTTTTTC
TTTTTTTTTTTTTTTTTCCCCTTTTTTTCTTTTTTTTTTTTTTCCTTTAC
GTTGTACCTTATTCATTATCACTTCTTCTTTTTCTTTTTTCTTTCTTTTC
TTTTCTTCTTTTTTTCTCTTCTTTTATTTTTTTCCTCCTTTTTTTTACTT
TATTTCATATTCTCTTTATTCCCTTATCTTTCTCNTATTTTTTCTTTTTT
ATTTTCTTTTATCTATTTTTTTTCTTCTTTTTTTTATCTCTTTTTTTTCT
TTTAATTTATTACTATTTCTATTATCTGTTCTACTTTATCTTTTTCTCAT
ATATTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_c07.b1 MSMg01no093_c07.b1 CHROMAT_FILE:
MSMg01no093_c07.b1 PHD_FILE: MSMg01no093_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:22 2005
         (181 letters)



>mm_chr2_61025166_61025746
          Length = 581

 Score =  350 bits (181), Expect = e-101
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttactgagtgacaccttgggaacggctcttttatatgaaatacatcccaaggctccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactgagtgacaccttgggaacggctcttttatatgaaatacatcccaaggctccctgg 260

                                                                       
Query: 61  atgcttaactctaggtctcattgacttgcaccatgagccatctcattcatatttgaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttaactctaggtctcattgacttgcaccatgagccatctcattcatatttgaaaga 320

                                                                       
Query: 121 agcaatgaagatcgaattagctctataatttaaacaatttattggtatttctgaatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaatgaagatcgaattagctctataatttaaacaatttattggtatttctgaatatta 380

            
Query: 181 a 181
           |
Sbjct: 381 a 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no093_c07.g1 MSMg01no093_c07.g1 CHROMAT_FILE:
MSMg01no093_c07.g1 PHD_FILE: MSMg01no093_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:22 2005
         (281 letters)



>mm_chr2_61154783_61155463
          Length = 681

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggtacacaccattcaattttcacttatgggcgtacagatttcagttgggcattgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cttggtacacaccattcaattttcacttatgggcgtacagatttcagttgggcattgact 421

                                                                       
Query: 61  tcacggaaaatactgaaagtgacctcaggtagactggctttggagatcacggtcctagtc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcacggaaaatattgaaagtgacctcaggtagactggctttggagatcacggtcctagtc 361

                                                                       
Query: 121 aggtgtcgttgcttgagttgtctaatctaatggcttgttaaatctggaaagcatttagaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggtgttgttgcttgagttgtctaatctaatggcttgttaaatctggaaagcatttagaa 301

                                                                       
Query: 181 gtgtatgccagcttttagaggaacaacaaggcctagtgaagtggagtgtgatcatgagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtgtatgccagcttttagaggaacaacaaggcctagtgaagtggagtgtgatcatgagca 241

                                                   
Query: 241 aaggcagacatttgcctggtactttctacaggatgcaaag 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaggcagacatttgcctggtactttctacaggatgcaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)