Query= MSMg01no094_c06.b1 MSMg01no094_c06.b1 CHROMAT_FILE:
MSMg01no094_c06.b1 PHD_FILE: MSMg01no094_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:39 2005
(284 letters)
>mm_chr2_79852988_79853671
Length = 684
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 1 gttaaaaggcagatattacgtatgagtcttttttactttatcgtctatgctggcacaaat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaaaaggcaggtattacgtatgagtcttttttactttatcgtctatgctggcacaaat 260
Query: 61 tacagatagtaagatattttctcctagatcaaactgtgtgagttcagagctactgatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagatagtaagatattttctcctagatcaaactgtgtgagttcagagctactgatgga 320
Query: 121 ggttatgagacctcatggctcttgttgacttgagctgtacagatactttgcttcaagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttatgagacctcatggctcttgttgacttgagctgtacagatactttgcttcaagctc 380
Query: 181 agaaattacagagtcccagctgttcaaatgtcggatagaaccaagggtttggacgtgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaattacagagtcccagctgttcaaatgtcggatagaaccaagggtttggacgtgttc 440
Query: 241 catctggctgaactttaacggtataaacaagaataaggcagcag 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctggctgaactttaacggtataaacaagaataaggcagcag 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_c06.g1 MSMg01no094_c06.g1 CHROMAT_FILE:
MSMg01no094_c06.g1 PHD_FILE: MSMg01no094_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:39 2005
(553 letters)
>mm_chr2_79983074_79984029
Length = 956
Score = 1052 bits (544), Expect = 0.0
Identities = 552/556 (99%), Gaps = 3/556 (0%)
Strand = Plus / Minus
Query: 1 accacgagtaaaccaagctatgtttgttggagttgcctctaattcatggtcttgccaatg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 756 accacgagtaaaccaagctatgtttgtcggagttgcctctaattcatggtcttgccaatg 697
Query: 61 gggtcattttaaaggtgctcatgtctggctgttcccatcaatctagattaggattcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gggtcattttaaaggtgctcatgtctggctgttcccatcaatctagattaggattcaagt 637
Query: 121 gtagaactaggatacttaaaggcagagtcatgaatgttgggtctggtcaaaactcattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtagaactaggatacttaaaggcagagtcatgaatgttgggtctggtcaaaactcattac 577
Query: 181 cacattctctaccctgagcttaaatgtggattttggctttagtgagtaagtacttttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cacattctctaccctgagcttaaatgtggattttggctttagtgagtaagtacttttagc 517
Query: 241 cacttaaaatatagttttctaaaatttgctgtcctatgcacgtagctacccatctttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cacttaaaatatagttttctaaaatttgctgtcctatgcacgtagctacccatctttctc 457
Query: 301 ccttttaaaaacgtggggtggtgagtacagcacctaaatattaagtactgaagtactttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccttttaaaaacgtggggtggtgagtacagcacctaaatattaagtactgaagtactttg 397
Query: 361 gtttgtatttcaatataacacaaacagtagttatagaatgatcgagagtttaaagcaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtttgtatttcaatataacacaaacagtagttatagaatgatcgagagtttaaagcaagc 337
Query: 421 atgggctgcatatagcaaatttgacatcatcac---catcatcagaaatttgagacaaat 477
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 336 atgggctgcatatagcaaatttgacatcatcaccatcatcatcagaaatttgagacaaat 277
Query: 478 aaacaaaaatctatctttatattctttagaaaaatttccttgttaaggatcaatttgtaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaacaaaaatctatctttatattctttagaaaaatttccttgttaaggatcaatttgtaa 217
Query: 538 aacaaatgcttgccgt 553
||||||||||||||||
Sbjct: 216 aacaaatgcttgccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 956
Length adjustment: 10
Effective length of query: 543
Effective length of database: 946
Effective search space: 513678
Effective search space used: 513678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
