BAC Information

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BAC

Clone NameMSMg01-094G01
Chromosome2 (Build37)
Map Location 155,498,876 - 155,637,883
singlet/doubletdoublet
Overlap geneTrpc4ap, Edem2, Procr, Mmp24
Upstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b
Downstream geneItgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094G01.T7 (MSMg01no094_g01.b1)MSMg01-094G01.TJ (MSMg01no094_g01.g1)
ACCAG311566AG311567
length809781
length of high quality
(start - end)		158 (209 - 366)105 (138 - 242)
definitionCHROMAT_FILE: MSMg01no094_g01.b1 PHD_FILE: MSMg01no094_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:00 2005CHROMAT_FILE: MSMg01no094_g01.g1 PHD_FILE: MSMg01no094_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,498,876 - 155,499,033)(155,637,779 - 155,637,883)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNCCCC
NNNNNNNNNNNNNNNNNNNCCTTACATTAATCCTCTATAAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTCTCTTCCCG
GATAATTTGTCCCTCTCGGTCAAAAAGGTCTCAGTGAACTGTGAATAAAT
TTACCCCCAAAGAAATATTTTATTGTCAAGGAATAAGTTTTGGTAAAGAG
AGCATCTGACTCCCAAACAGCCAAGGACCCCAGCAAATAAAGCTGTAGCC
TACGCCCTGCTCCTGACATAGGACTGCTCTGAACCCTACTTGTCAGTCTA
CGCTTTCCCCAGTGCACACTCAAGACTCCAAATTCAGCTGTGTTTTCTCT
ACTTGATCTCCCCTGCCCAGAGGTTCTCCCCCAGGCTTTTCTATCTGATA
TGCTACCTCTTCCTTCATACTGCAGTCTATAATGGCCAGCTAGACCACCC
ACTGTTTAACGTATGCTTACTACCCTATCTTTGATAACCTGCCTGACTCC
TTGTAATTCTTGTTAAGGTGACTTAAGGATCCTTATTACCTACACATATC
CGTATATCCTGACTTTCACATATCCCCATACATCATTACGAATCACATCA
ACATTCCCACTCCTACCTTACACCTCTTTTTCTCTTTACCCTCCCAACAT
TTGTCCCCTCCTTCTCAACCTTCTTCTCTATCATTTGTTTCCCATCTCCC
CATCTAATCCTTTGCCCCATCACTTACCGTAAAATACATATTCACACCCA
CCCCCTACG

TTTTTTNTTATCTCTATTCTCANCTCCTATCACACACCCTCTCTTTTTCC
TCCTCTCTCCCNNACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCTCAGCC
CCAGGGCCCAGGCCCAACAACCCAACCCCAACCCTGGGGCTCAGACTCAC
AACCTCCCATAGAGTCTGTCCATCTGTTTCTTCCAACTCTTTAAAGAAGA
CTGGATGTAACTAATTCTACATCAGCCTCCTGCTGTCCAAGACTATGATA
CTAGAGGCTTATGGGTGTGTCAGAGTTGTGTAAAGACTTGAAAGGACACT
GCCATGGTCTGTAGTGACCACGTTAGGCTAGCATATAGTTACCAATATCA
TTTGGCCTTGGCCTCGGTCTGGTGGTAATCCCTAGCATGCTTTATACGAT
GGCATAACCCCCACTTGGTCTGCGAATCCTTCGTTGAGAGTATCCAAGCA
TGTATGAGAGCTGCATTACCAACTTGACTCTTAAGATACTACCAACCAAG
AGTCTCTATTAAAAATTCTTTTATCGCGAATGGGCTTGAGCCTGATTGCA
TGAATGATTGTACAAGTTATTGTTTGCATGAGCCTGCAGACATAAAAAGA
GTACACCTGGGATCTCTAGGAGCTGGATTTTAAGCACTATGCGAAGCCCC
CAGGAGTTTATTTGCGCACTGACTTCCAGATCCCTCTGCTATTATTAAAA
ATTTTTTCCAAACTATGAAAGTTGCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_g01.b1 MSMg01no094_g01.b1 CHROMAT_FILE:
MSMg01no094_g01.b1 PHD_FILE: MSMg01no094_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:00 2005
         (158 letters)



>mm_chr2_155498676_155499233
          Length = 558

 Score =  290 bits (150), Expect = 3e-83
 Identities = 156/158 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaatattttattgtcaaggaataagttttggtaaagagagcatctgactcccaaac 60
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 201 aaagaaatattttattgtcaaggaagaagttttggtaaagagagcagctgactcccaaac 260

                                                                       
Query: 61  agccaaggaccccagcaaataaagctgtagcctacgccctgctcctgacataggactgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccaaggaccccagcaaataaagctgtagcctacgccctgctcctgacataggactgct 320

                                                 
Query: 121 ctgaaccctacttgtcagtctacgctttccccagtgca 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaccctacttgtcagtctacgctttccccagtgca 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no094_g01.g1 MSMg01no094_g01.g1 CHROMAT_FILE:
MSMg01no094_g01.g1 PHD_FILE: MSMg01no094_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:00 2005
         (105 letters)



>mm_chr2_155637579_155638083
          Length = 505

 Score =  203 bits (105), Expect = 2e-57
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatctcagccccagggcccaggcccaacaacccaaccccaaccctggggctcagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agtgatctcagccccagggcccaggcccaacaacccaaccccaaccctggggctcagact 246

                                                        
Query: 61  cacaacctcccatagagtctgtccatctgtttcttccaactcttt 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cacaacctcccatagagtctgtccatctgtttcttccaactcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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