BAC Information

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BAC

Clone NameMSMg01-094G19
Chromosome2 (Build37)
Map Location 87,388,203 - 87,388,589
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094G19.T7 (MSMg01no094_g19.b1)MSMg01-094G19.TJ (MSMg01no094_g19.g1)
ACCAG311601AG311602
length1,406698
length of high quality
(start - end)		---564 (73 - 636)
definitionCHROMAT_FILE: MSMg01no094_g19.b1 PHD_FILE: MSMg01no094_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:04 2005CHROMAT_FILE: MSMg01no094_g19.g1 PHD_FILE: MSMg01no094_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAAAAAAAAAANNNAANNNAAAAAAAAATTANCACAAATAAANNNA
NNNANAAAANCAAAACAAAATAAACACAANTAATANATATAANATAACCA
TATATTTGTCTGTCCNTCTATAAATACGACACAAACCACACCTCACATAT
CACACCACAACACACACCCAATTATTATATAATAAAAATGTAATAGATAT
AAGAATACACATGTACATACCTGTGTGTTCTAGTATGTGGTGTCGGCGGT
GTTATGTGTCTCAAGTCCTATCACTCATCACGAGACCGCGCCACACCGAC
GCGGTAGTGGCGCGTGGTTGCTGTTTGGTGTGAGATTGAGACGTGGAGCT
GCAGGTGTATTGTACGTATTGAATCTCGTAACGTCGTTCGACCTGGCTAT
CTGTTGCTGTTCTCCGTTTCATCCGCTTCGCCCTCCTGACATCATAGAAA
CGCTATTACCATCCAAGGCACCTAACATCCAACCCCTCACTCCATTATGA
ACCGTGAGATTATATATAATATAACTCTATTCCACGATANTCATCCATGT
ACTATGATATATGTTACTCCATATATATGTACATCGTCTTCGGCATTGGT
CGCTGCTTCGTGGCGACTATTCGTACCCGCCGCTCTTTCGCCTCTCGCTT
ATATAATTGATCGTTGATAGCGCTGGATCACGACACATAAGGATACCGCT
ACAGAATACTCTCCTATATTATCCGAATAATATCTGCTCATGTCTACGCC
ATACCTCTCACTTTATACTCACATCATAGACTCTATACTACAGACGGTTA
TGATAACGGCCGATGTACGGCGCGATTTACCTCCGTAATCTCATCTCTGA
ACACTAGAGACTATCTAGTACCTGTATCCGTCGACTCCGTAATCCTATGT
TCGCATATCGCGCCATTTGACTGTATATCGCAACTCGCCCTGGTCGTCGT
CCTCACAATGCATACTGCGCGTGTGTACGGAGTCACTCCATAATACGACG
CGCTCTCGCCCTCAGCGACGGACATGCGTATTGTTACGAGTAGAGAAGTC
TCTATATCGTTAGTAGACCGCGTACATTTTCCGCGATGACCCTGTATGTC
AGACGCGTCTCAGTCACGACGACCTGCCCTATCTATAACGTCGCGCCTAC
GCACGTGCCTGCTCAATATAGAACATTCCTGCGCCCATATTCTCACGACC
CGCCTCATAACATCCATCCTACATGCGTATATNGCAATAGCGACTGCGCG
CGCAGCCGGATTGTATATATGTGCGCCCGTCGGTGTACTGGTTGCTTGTA
TCTCATCGCAGTACTNACGCAGCTCTCGCGCTCGTTCGCATATGCGCGTC
TCTCCTCGTACTCATGACGCGCTCTAACGCTGTCGAGATAGTTGCACTCA
TGCGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGAGTTATGAGCCTGTCAGCCTGCCC
CTGAGTGCACAAGATTTTGTCTCTTAGGAATAAGAGGAAGTTAAAATAAC
AGGATTAAGGTTGAGATTTCAAACAATCAACATGATTGAAGAGCATTCCT
ATTATCAATCTTTAAACATTTTTATGTAGGTAATTCCCAAACTTAGCATT
AGCAAATTGACTTCAATTAATTTGGTACTCATTACTTTGTGATCATCACT
CATAATATATATTTTAATGTTATAAAATAGGGAACTATTACATATCCATA
CACCTGTACAGATTTATGTTAACCCCAAAAATACAACAAACCATGCATTC
ATATTTACTTAGTGGATACAGGAAACTTCATTAGCTCATTGCCTAAAGAT
ATTTATATATGGTTCTTGTATTTTATGGCTAATATTGATATATAACTGAG
TACACACTGTGCATGCCCCTTTGGCACTGGGTTACCTCACTCAGGATGAT
ATTTTCAAGTTCCATTCATTTGCCTGGAACATTCATGGCATCTTGGTTTT
ATACAAATTTTATCTTGGTTTTATACAAATAAAAGTGCTATGAAAATAAT
CAAGCAATTGTCTTTGTGAGATGTTGGAGCATCTTTGCGTATATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_g19.g1 MSMg01no094_g19.g1 CHROMAT_FILE:
MSMg01no094_g19.g1 PHD_FILE: MSMg01no094_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:04 2005
         (564 letters)



>mm_chr2_87388003_87388966
          Length = 964

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctcttaggaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctcttaggaata 260

                                                                       
Query: 61  agaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatgattgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatgattgaaga 320

                                                                       
Query: 121 gcattcctattatcaatctttaaacatttttatgtaggtaattcccaaacttagcattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattcctattatcaatctttaaacatttttatgtaggtaattcccaaacttagcattag 380

                                                                       
Query: 181 caaattgacttcaattaatttggtactcattactttgtgatcatcactcataatatatat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 caaattgacttcaattaatttggtactcattactttttgatcatcactcataatatatat 440

                                                                       
Query: 241 tttaatgttataaaatagggaactattacatatccatacacctgtacagatttatgttaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tttaatgttataaaatagggaactattatatatccatacacctgtacagatttatgttaa 500

                                                                       
Query: 301 ccccaaaaatacaacaaaccatgcattcatatttacttagtggatacaggaaacttcatt 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 cccccaaaatacaacaaaccatgcattcatatttacttagtggatacaggaaatttcatt 560

                                      
Query: 361 agctcattgcctaaagatatttatata 387
           |||||||||||||||||||| ||||||
Sbjct: 561 agctcattgcctaaagatatatatata 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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