BAC Information

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BAC

Clone NameMSMg01-094L22
Chromosome2 (Build37)
Map Location 180,191,319 - 180,191,721
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094L22.T7 (MSMg01no094_l22.b1)MSMg01-094L22.TJ (MSMg01no094_l22.g1)
ACCAG311829AG311830
length1,746692
length of high quality
(start - end)
---398 (73 - 470)
definitionCHROMAT_FILE: MSMg01no094_l22.b1 PHD_FILE: MSMg01no094_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:31 2005CHROMAT_FILE: MSMg01no094_l22.g1 PHD_FILE: MSMg01no094_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTT
CCCNNNNNNNNNNTTTTTNTNTNNTTTTNNNAATATAACTATTAGANNNT
GTTTNTNNCTCATTAANTCGANAACTCACTCCCTCGTATCTCTAGCCAGA
CAGATATATATCAGCAGGCGGAANAGCCCNCCCNAANNAATNTAATATTN
NTCTAATTTTNTAATAATAAGACGACCGCNTCTACAACATGCAGACTTAG
GACCATAATAAGCAACTATAGTCATACCGCGATGACAAATNCATATCTAT
CACATCTGCGTACGCGACGCGCCCCGGCGTACGANTGGAAGCTGCTCACG
ATCGCGGCTTACACGTGCCGTCATGCTGCGCACACTTGCACCGCTTGTGC
TGGCCACACTCGCCCCNGCCGNCGAACTATCGACGCTGTTGTACGAGTGA
GNCGCGATGTNATTGTGTGAGTGACAGAGTTGTTATGTGACGTCGTGTTA
CCGCATTAGACGCCGGCTGATGTGATCATATGAGTAGATCTATGAAGTCT
GCTGCGAGTTTNGTATCGCCGCGCACGAACAGAGTAGACGAACGCGCTGT
CACGATCGTGACTTGTGGCGTATTATGTGCGCCGCGTGTGTGTCTAGGTG
ACGATGTGTCAGCTGGGTAGATGTACGAAGATAGTACCGTAGTGAGTATC
AACGCACGAGATCTACTAGAGCCACACACTGCAGGCATATAGTCGTACGA
CTCTGCACTGTAATAACGAGCGAGGGTAGGTGTCATAGACAGCATGTATT
GACGAATCACCGACAACGCTATATAAGATCACTGACGTCCTGTATGTGCC
GGGCCAGATGTACGCGTGTACGTGCGCGACGTGGCATAGATACCATAGCG
GGGACGAGTGAGAGAGGCGGTCGTTCGAATGTGATATAGCACGTATACGC
GCACGATNTGACTCCGGTTCTATAATCGCACNTATATACAGCTATATGAT
GAGATAATAATATACGAGATATCTCCACATAAATTCGTTTTATGATCGGA
CAGCAGTCGCGTACGTGAGTATATGTCTCGAGAGTTATACTCTGTAGCAC
CTACGCTGATNGTGTCATGTATAATGTCGATGTGCGTATACATCTATCGT
CGCGCGTGTATTGTGGATGTGGTATACGACACGAGCTGACGTTGACTGAT
CGATAAGCAGCGACATATGTGTATTTAGAGTATGATTGAGATGTNCTATA
TAGAGGAACACACACATAGATCGACGCTCGCATCATGAATCGCACTATGA
TCCGTTATGTCGTACGTGCTGCAGCGCGATTAGTCTGCAGACGAGCGGAG
ATCAGTAAAAGCGTCACGCGACGCGCTCTCAATGTCATACAACGAGACTC
AGACTCGCGTACGACACTAATAGACATATCTCGCACGCAGCGTCGTATNG
GANATACACATCATGGATATCTNATCGATACTCATATGCAGACCGATCGT
CGTCGCGCGGCGTGNGTTNTGTGCATNCGCCGACAGCGATGTGTGCGACA
GTGTGACTGTCATCATCAACGTGAGCTGATGACGCGCGCGTGACGGANCG
CGCGAGATGCGCAGGATGCGCAACGATGACATGACACGTTAGTGCCATCA
TATAATGATGCTGTCACGCTCATGTATGGCTTACATTAGGTCTATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCCTTCTCACTGCACATGAGGGAAGC
TGCAAGTCTGCAGTGGGGTGGGGGAAGGCAGAGCCGCTGCGCTAGAGCGA
GAGGGAAGATGGGAGTGGACTTGGGGCGCAGGAAAGCGTGAGGGGGGGGG
CCGCTAGAGCTGTCGGCCCAGGTTAAAGGTCTGCTAGTATACGCAGGTGC
GAGCCTCTGCGGGTCTGTTCAGCGACAGATCCAGTGGCTGTGGTGGTTGT
TGCTAAGACCGAGGGAAACGTGGAGCACGGAAGTTGCTCACTAGTGGCGG
GCTTTGTCCCTACGAGGAGCGCGGATGCCCGGGTCCCTGAGGCCCGGTAC
CTTCACGCAGCTCTCCGATGCCCCCGGACTCGTGTGTTCGCCAATGAGAG
TTCGGGTCGCTTTGCTGCCTGATTGGCACGCTTAGCTCCAAACCCGGGAA
CTCAAGGCAGGGTACCTCCTTCACAGGAGAGGTGAGCATCTGCAGGATAA
ATGATATAGAGACTCATAGTCGCACCTTATAGCCTGGGTTTCTCGGTGCA
GCGCCTCGCACTTACCGTGTTGAGCATCGCTGCCCCTCCCCATACTTGTC
CTTGTCGTGTCTTTTGTCCCCTTTTCGCCCCCCCCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_l22.g1 MSMg01no094_l22.g1 CHROMAT_FILE:
MSMg01no094_l22.g1 PHD_FILE: MSMg01no094_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:32 2005
         (398 letters)



>mm_chr2_180191119_180191921
          Length = 803

 Score =  725 bits (375), Expect = 0.0
 Identities = 394/403 (97%), Gaps = 5/403 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccttctcactgcacatgagggaagctgcaagtctgcagtggggtgggggaaggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccttctcactgcacatgagggaagctgcaagtctgcagtggggtgggggaaggcaga 260

                                                                       
Query: 61  gccgctgcgctagagcgagagggaagatgggagtggacttggggcgcaggaaagcgtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccgctgcgctagagcgagagggaagatgggagtggacttggggcgcaggaaagcgtgag 320

                                                                       
Query: 121 gggggggg-----ccgctagagctgtcggcccaggttaaaggtctgctagtatacgcagg 175
           ||||||||     |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ggggggggggggaccgctagagctgtcggcccaggttaaaggtttgctagtatacgcagg 380

                                                                       
Query: 176 tgcgagcctctgcgggtctgttcagcgacagatccagtggctgtggtggttgttgctaag 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgagcctctgcgggtctgttcagcgacagatccagtggctgtggtggttgttgctaag 440

                                                                       
Query: 236 accgagggaaacgtggagcacggaagttgctcactagtggcgggctttgtccctacgagg 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgagggaaacgtggagcacggaagttgctcactagtggcgggctttgtccctacgagg 500

                                                                       
Query: 296 agcgcggatgcccgggtccctgaggcccggtaccttcacgcagctctccgatgcccccgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcgcggatgcccgggtccctgaggcccggtaccttcacgcagctctccgatgcccccgg 560

                                                      
Query: 356 actcgtgtgttcgccaatgagagttcgggtcgctttgctgcct 398
           || ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 561 acgcgtgtgtacgccaacgagagttcgggtcgctttgctgcct 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 803
Length adjustment: 9
Effective length of query: 389
Effective length of database: 794
Effective search space:   308866
Effective search space used:   308866
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)