Query= MSMg01no094_p03.b1 MSMg01no094_p03.b1 CHROMAT_FILE:
MSMg01no094_p03.b1 PHD_FILE: MSMg01no094_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:48 2005
(543 letters)
>mm_chr2_170112756_170113698
Length = 943
Score = 845 bits (437), Expect = 0.0
Identities = 461/469 (98%), Gaps = 4/469 (0%)
Strand = Plus / Plus
Query: 5 gaattcaccgtgtgcaagggacgagaaaagtcccgatccaccgggacccagagtacgttt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccgtgtgcaggggacgagaaaagtcccgatccaccgggacccagagtacgttt 264
Query: 65 ctcaattcggttacgatctgaaaagagagc-aaggtctcgttggcgagtgtcgccaagta 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ctcaattcggttacgatctgaaaagagagccaaggtctcgttggcgagtgtcgccaagta 324
Query: 124 ctcccccttcccttccctgtggccacagaaaggtctggtgggggtggacagggcagtgtg 183
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcccccgccccttccctgtggccacagaaaggtctggtgggggtggacagggcagtgtg 384
Query: 184 gccagcctgttgccatggaggcggcttaatctgaagacagtcgaattcaaagctcacagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagcctgttgccatggaggcggcttaatctgaagacagtcgaattcaaagctcacagt 444
Query: 244 agaaaggatgggatagcattgaaatggtgaccgtttacttagaagaatgcccaagctgta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaggatgggatagcattgaaatggtgaccgtttacttagaagaatgcccaagctgta 504
Query: 304 gcgcacagagataagctgcggcagacatctctccagccggccgaagcagccaaaccggtt 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcgcacagagataagctgcggctgacatctctccagccggccgaagcagccaaaccggtt 564
Query: 364 gggcaactttctttcttttctttttcctttttctgttggatcaggccagtactgaatagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggcaactttctttcttttctttttcctttttctgttggatcaggccagtactgaatagc 624
Query: 424 aactagcaacctgggactgtagggaaaaaaagagaaccctcccaccccc 472
|||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct: 625 aactagcaacctgggactgtagggaaaaaa-gagaaccc-ccc-ccccc 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_p03.g1 MSMg01no094_p03.g1 CHROMAT_FILE:
MSMg01no094_p03.g1 PHD_FILE: MSMg01no094_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:48 2005
(608 letters)
>mm_chr2_170181185_170182192
Length = 1008
Score = 1152 bits (596), Expect = 0.0
Identities = 605/608 (99%)
Strand = Plus / Minus
Query: 1 agcagactctgatgacacagccccagctctccgagtgacccctttccattcctgtctgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 agcagactctgatgacacagccccagctctccgagtgacccctttccattcctgtctgta 749
Query: 61 tcctaaatatcaaggataaatgaggggggttcaccgtcgtcattgtcatcgtcgtcgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tcctaaatatcaaggataaatgaggggggttcaccgtcgtcattgtcatcgtcgtcgtgc 689
Query: 121 gtgcacctgtgcaccgttgctgtggttactgaaaggatactgtctgtttgttgttgtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gtgcacctgtgcaccgttgctgtggttactgaaaggatactgtctgtttgttgttgtagt 629
Query: 181 cagtgagatcgagcgaagggatcccccgctcggaagaaagtaacgtgaaagactccagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagtgagatcgagcgaagggatcccccgctcggaagaaagtaacgtgaaagactccagct 569
Query: 241 gccaagtaagtgaccgtgaactcagcctgcgggcaggttcagcctcgcgacctggaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gccaagtaagtgaccgtgaactcagcctgcgggcaggttcagcctcgcgacctggaagtt 509
Query: 301 catatccacttgtgaaacattgcctggttaagcacccactgtatacccagcagtattggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 catatccacttgtgaaacattgcctggttaagcacccactgtatacccagcagtattggg 449
Query: 361 ctctacagacatggtatggggcgagtcctcagcgcttctctctccatgtagaaagtttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctctacagacatggtatggggcgagtcctcagcgcttctctctccatgtagaaagtttct 389
Query: 421 tcccagacttccagtgttagcagaaatatcacctcctcaaagagctcctgtgccctgcgg 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 388 tcccagacttccagtgttagcagaaatgtcacctcctcaaagagctcctgtgccccgcgg 329
Query: 481 tcatccctgtcatagagtttgctcccttctcggtgctgtaacaattctcatgtctctcct 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 328 tcatccctgtcatagagtttgctcccttcttggtgctgtaacaattctcatgtctctcct 269
Query: 541 gatccttcccacccatgtctggaacattgtagagcaagcaggtgcttctaggtttctctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gatccttcccacccatgtctggaacattgtagagcaagcaggtgcttctaggtttctctc 209
Query: 601 atcttctg 608
||||||||
Sbjct: 208 atcttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
