BAC Information

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BAC

Clone NameMSMg01-095B08
Chromosome2 (Build37)
Map Location 60,253,699 - 60,254,013
singlet/doubletsinglet
Overlap genenone
Upstream gene2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176
Downstream genePla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095B08.T7 (MSMg01no095_b08.b1)MSMg01-095B08.TJ (MSMg01no095_b08.g1)
ACCAG312082AG312083
length701697
length of high quality
(start - end)
549 (32 - 580)300 (56 - 355)
definitionCHROMAT_FILE: MSMg01no095_b08.b1 PHD_FILE: MSMg01no095_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:59 2005CHROMAT_FILE: MSMg01no095_b08.g1 PHD_FILE: MSMg01no095_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGGCGCTATACGACTCCTATATCGAGAGATCCGCGGAATTCTTGGTCC
CCACCCAGTGGAACTGTTTGAGAAGGATTAATAGGTGTGGCCTTATTAGA
AGAGATATGTCACTTGACAGGCTTTGAGGTTTCAAAAGCTCATGCCACCC
CGTTAGCTCTCTGCCTGTTGCCTGTGGATTAAGATGTAAGCTCCCAGCTA
CTGTACCAGTGCTATGCCTGCTTCCATGTTCCCCCATAATGTTTTTAGAC
TCTAACCCTCTGGAACCATGAGCCCCAAATGAAATGCTTTCTTCTATAAG
TTGACTTGTCCAGGGTGTTTTGTCACAGAAATCAAAAAGCAACTAAGAAG
GTACCACTCCCTGCTTGCCATAAGCTTGTCATATCATAAAGCAAAATACA
CTTAGTCCAACTTCAAAAGTGTCCAAAGTCTTTCAGAGTCTCAGCGTGGT
TTCAAAGTCCAAAGTCTCCTCTGAAGCTCAAGGAAATCTCTTAATTGCAT
GCTTTGCAAATTCAAAAGGCGAATTACATACTTCCAACATACAATGGCAC
AGAATATACATCATTCCAAAAGGAAGTAATGGGGCATAGTAAGGAAATAG
TGGACCAAAGTAAAACCAAAACCAAGCAGGGCAAACTCCAAATCCTATAG
TTCCTTGCCTGTTTCCAAAGGGCTGAGAGGCTCTGCCCTTCCAGCCTTGC
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGAGGATCCTGGAGGGTGATTTTCCAGACTGCACAGCATTTATAA
TTTCATGTCTGGTCTTAACAGTTCAACATAAGACAACTGAAATTCAGTCT
TGTTAAATCTTTATGTTGTGAAGCACTGTCAAGCTGTTTGCATGTGGTTT
TACAAAAGATTCAGGCTCAAAGAAAAGGCCAATACTGCAGGCATACCTGT
AAATAAATATCTAGACTGTGTGCTTCATTTCATTATTTTGTTTTTAGTTT
GTTTGTTTGTTTTTTTCAAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTC
CTGCAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCT
GCCTCTGCCTCCCGAGTGCTGGGATTAAAGATGTGCGCCACCATGACCGG
CGGTTCATCTCATTATTGTTACTACATCTTCAGTGTTTTTACCGAAGAGC
CAACAAAAGTGCCCCAATACTGACAGGCTGCGTATAGTGTGAATCTGCAT
ACACCTCTAATTCCCGATGAATGTTCTAATTGCTCAACATAATTATTCAC
TTATATCTTAAATTTATTCACCTCTGTATACACTTTATCTTTCCTCCTCT
TTAATATTTCATCTAAGTTACCTGTTTTTTGATACGTTCCTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_b08.g1 MSMg01no095_b08.g1 CHROMAT_FILE:
MSMg01no095_b08.g1 PHD_FILE: MSMg01no095_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:59 2005
         (300 letters)



>mm_chr2_60253575_60254274
          Length = 700

 Score =  482 bits (249), Expect = e-140
 Identities = 291/315 (92%), Gaps = 17/315 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgaggatcctggagggtgattttccagactgcacagcatttataatttcatgtctggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgaggatcctggagggtgattttccagactgcacagcatttataatttcatgtctggtct 380

                                                                       
Query: 61  taacagttcaacataagacaactgaaattcagtcttgttaaatctttatgttgtgaagca 120
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 379 taacagttcaacataagacaaccgaaattcagtcttgttaactctttatgttgtgaagca 320

                                                                       
Query: 121 ctgtcaagctgtttgcatgtggttttacaaaagattcaggctcaaagaaaaggccaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgtcaagctgtttgcatgtggttttacaaaagattcaggctcaaagaaaaggccaatac 260

                                                                       
Query: 181 tgcaggcatacctgtaaataaatatctagactgtgtgcttcatttcattattttgtt--- 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 259 tgcaggcatacctgtaaataaatatctagactgtgtgcttcatttcattattttgttttg 200

                                                                       
Query: 238 tttagtttgtttgtttgtt--------------tttttcaagacagggcttctctgtgta 283
           ||| |||||||||||||||              |||||| |||||||| |||||||  ||
Sbjct: 199 ttttgtttgtttgtttgtttgtttgtttgtttgtttttcgagacagggtttctctgcata 140

                          
Query: 284 gccctggctgtcctg 298
           |||||||||||||||
Sbjct: 139 gccctggctgtcctg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)