BAC Information

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BAC

Clone NameMSMg01-095D24
Chromosome2 (Build37)
Map Location 18,862,697 - 18,862,987
singlet/doubletsinglet
Overlap genePip5k2a
Upstream gene1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479
Downstream gene4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D24.T7 (MSMg01no095_d24.b1)MSMg01-095D24.TJ (MSMg01no095_d24.g1)
ACCAG312209AG312210
length655688
length of high quality
(start - end)
289 (35 - 323)292 (35 - 326)
definitionCHROMAT_FILE: MSMg01no095_d24.b1 PHD_FILE: MSMg01no095_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:12 2005CHROMAT_FILE: MSMg01no095_d24.g1 PHD_FILE: MSMg01no095_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTTTGTTTAGCTCTGTACCCATATTTTAATATGGT
TAATTGGTTTTCTGGAGTCCAACTTCTTGAGTCTTTATATATATTGATTA
TTAGCCCCATATCTGATTTAGAACTGGTAAAGATCTTTTCCCAATCGGTT
GGTTGCCATTTTATCTTATTGAGAGTGTCCTTTGCCTTACTTACAAAAGC
TTTGCAATTTTATGAAGTCTCATTTGTCAATTATTGCTCTTACAGCACAA
GCCACTGGTGCTCTTTTCAGGAACTTTTCCCCTTTGCTCATATCTTAGAG
GGTCTTCCCAACTTTCTCCTCTATATTTTTCACTGCCTCTAGTTTTATGT
GGAGTTCCTTGATCCACTTATACTTGACCGTTGTAAAAGGAGATAACATT
GGATCAGATTCGAATTCTTCTACATGCTAGCATCATTTGTTGAAAACGCT
TTTTTCCACTGGATGGTTTTAGCTCCATTTTCAATGATCAAGTGACCATA
GGTGTGTGGCCTCATTTCTGGGTCTTCCATTCAATTCCATTGATCTACCC
ACCTGTCCATGTCCCAGTACCATGCAGTTCATTGATCCAGCGCCCCTCCT
GGTGCGACCTCACTTCTGGGCCCCCCCTTTCAATCCGCAGCACCAACCTT
CCAGC
CTTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGAGTCTGGTGCT
GTGGAGCTTACCTGCAGTCACAGCACTTGGGAGGCTGGTACAATAGCGTT
CTGGAGACACAGATTTGAAACCAGTCATGCCACAATAGTGAGACCTCGTC
TCAAAGTCAGACACTGGAAATGTCAAACCAACAAGAGCCAGTCTGGGTGA
AAATTTCCGTAACACATGATCTTGGGGCAGGATCACCACATGGTGCTATA
ACCCACTGGACTGTGGGCGACAGGGCCCAGTTGCGTTCCTGTCCCTTCCT
TTCACTGTGGACAGTTGTATCTGTGTTTTGTACTCGCCCACCACGAAGGT
GACCTGACAGCCAGTGCTGCCGAAGGGAGATCAGAAAGAAATGAGAAAGA
GCTCAGGAGGAGATGCGCTCATCACTGTGGCCTGTGGGCTGAGGGGTCCT
CAGTGCAGGTCTGGCATCAAGGGAAGGAAATGGCTTCCCTCGCGACGGAG
AATTTGACCTTCTGACTTCATTCATTCCTTATCAACCGCCCCGATGGCTG
ATGCTTTCCCCTTTCCGGGCGTTCCTATTTAACCCTTCCGGCAAACGGAC
ATGCCCGGGGAATGGCCCCGCACTTAATTCTCAATCTCCCGGGATGGCCC
TTGCTGGTCACACGTTTTCTTTTGCCTCTATTTGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d24.g1 MSMg01no095_d24.g1 CHROMAT_FILE:
MSMg01no095_d24.g1 PHD_FILE: MSMg01no095_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:12 2005
         (292 letters)



>mm_chr2_18862368_18863059
          Length = 692

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgagtctggtgctgtggagcttacctgcagtcacagcacttgggaggctggtacaat 60
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 620 aggtgagtctggtgctgtggagcttagctgcaatcacagcacttgggaggctggtacaat 561

                                                                       
Query: 61  agcgttctggagacacagatttgaaaccagtcatgccacaatagtgagacctcgtctcaa 120
           ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||
Sbjct: 560 agcgttctggagacacagattcgaaaccagtcatggcacagtagtgagacctcgtctcaa 501

                                                                       
Query: 121 agtcagacactggaaatgtcaaaccaacaagagccagtctgggtgaaaatttccgtaaca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agccagacactggaaatgtcaaaccaacaagagccagtctgggtgaaaatttccgtaaca 441

                                                                       
Query: 181 catgatcttggggcaggatcaccacatggtgctataacccactggactgtgggcgacagg 240
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 catgatcttggggcaagatcaccacatggtgctgtaacccactggactgtgggcgacagg 381

                                                              
Query: 241 gcccagttgcgttcctgtcccttcctttcactgtggacagttgtatctgtg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcccagttgcgttcctgtcccttcctttcactgtggacagttgtatctgtg 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)