BAC Information

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BAC

Clone NameMSMg01-095F06
Chromosome2 (Build37)
Map Location 111,816,797 - 111,817,324
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308
Downstream geneOlfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F06.T7 (MSMg01no095_f06.b1)MSMg01-095F06.TJ (MSMg01no095_f06.g1)
ACCAG312268AG312269
length726722
length of high quality
(start - end)
323 (43 - 365)535 (73 - 607)
definitionCHROMAT_FILE: MSMg01no095_f06.b1 PHD_FILE: MSMg01no095_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:18 2005CHROMAT_FILE: MSMg01no095_f06.g1 PHD_FILE: MSMg01no095_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGATAAAGCTATGATTGTTCTTTTAAAACCTATGTCCTGCAATTCA
TCTAGGCAAATAGTCTATAGAACTGTTAGGTTTGGAGGAGAGGAGAGATA
AATACTTAATATAGCTTTTTTTTTCAATGAGATCCAGTCATGTGAACTTC
TTTTGTTAGCTGCGTGTCTGATATGAACAGAGCAGGTTGGAGCAAAATAG
AGAATGTGTGGGTAGACTGGGCCTAGAGGGTGGGAATAGCTTATGTAAAA
TAAAATTGGGTGGAAAATGGGACTGGATCAGAATGTGAATCCTGGCCCAC
ACCTGGGTGCAGGGATATATATGGCACGCAAGATACTTAGATTTGGTATT
AGAGGGAACTGCACCCTGTAACACTGACAAGGTGTGTTCTGGCCAACGCC
TATAGGTTGTAGAGTATGTGCCCCGCTCTCCAATAACCCAGGTTACCTGA
TTTTGGATCTCGCCTTTATCGGCTCCTTTACCATACATGCATCCTATGTA
CCCCCTTATTTTTTCTCTGCCCTTTTTACCCCTTTAACTCCTCTTACACC
TGTTCTGATCCTCCCACCCCGGTTTCCCCGCCCCCTTTTATTCACCATTA
TAACTTATCCTCACTTTTCTCATTCACACCCTTCTCCTTATATCACCCTC
TCCCTTTCCTTTTCCTTCCTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGACAGAGGTAGACATTTTCTAAACA
GAACTCCAATGGCACATGCTCTACAATCAAGAATTGATAAATGGGACCTC
ATAAAATTGGAAAGATTCAGCATGATTTTCTACTCTTCTTTATTATAATT
ATTTAATTTATAACCCAAAAAGTATATTAAAAATTGAAATTCACAGAGCA
TGGTGGCACACATATGAAATCTTAGAACTTGTGAGACTGAGCATGCGGAT
TGCTGAGATTTCTATAGCCTAGGGAGTACAAGGAGAGGCCGAGCATGGTG
GCCTTCACCTTTATTCCCAGTTCTTGGCAGGCAGAGCCAGGCAGACCTCT
GTTTATTTTCCTAGGAACTATGACTGCTTTCAGTTTATGAACATTATACA
AAAAGCAAAAGTAACACACAGCGTATAGAATAATGACAGTGCTGAATTAA
AGGCTGCTCATTGTTTTCATAATCTTTAAAGCCAGGATTCCATTGAAAAA
ATTGACAGACAAATCAAATCAAATCAAATCAAATCAAATCAAATCAAAGC
AAAGCATAGCAAAGCAAAGCAAAGCAAAGCAAAGCATAGCATAACAAGAC
AAATGTCCCATCAAAGGTATTTCACAGTTCATCTTTTCCACAAAAGTAAA
AACAATCCATCCTTGATTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f06.g1 MSMg01no095_f06.g1 CHROMAT_FILE:
MSMg01no095_f06.g1 PHD_FILE: MSMg01no095_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:18 2005
         (535 letters)



>mm_chr2_111816390_111817324
          Length = 935

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gacagaggtagacattttctaaacagaactccaatggcacatgctctacaatcaagaatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gacagaggtagacattttctaaacagaactccaatggcacatgctctacaatcaagaatt 876

                                                                       
Query: 64  gataaatgggacctcataaaattggaaagattcagcatgattttctactcttctttatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gataaatgggacctcataaaattggaaagattcagcatgattttctactcttctttatta 816

                                                                       
Query: 124 taattatttaatttataacccaaaaagtatattaaaaattgaaattcacagagcatggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 taattatttaatttataacccaaaaagtatattaaaaattgaaattcacagagcatggtg 756

                                                                       
Query: 184 gcacacatatgaaatcttagaacttgtgagactgagcatgcggattgctgagatttctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gcacacatatgaaatcttagaacttgtgagactgagcatgcggattgctgagatttctat 696

                                                                       
Query: 244 agcctagggagtacaaggagaggccgagcatggtggccttcacctttattcccagttctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agcctagggagtacaaggagaggccgagcatggtggccttcacctttattcccagttctt 636

                                                                       
Query: 304 ggcaggcagagccaggcagacctctgtttattttcctaggaactatgactgctttcagtt 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gggaggcagagccaggcagacctctgtttattttcctaggaactatgactgctttcagtt 576

                                                                       
Query: 364 tatgaacattatacaaaaagcaaaagtaacacacagcgtatagaataatgacagtgctga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tatgaacattatacaaaaagcaaaagtaacacacagcgtatagaataatgacagtgctga 516

                                                                       
Query: 424 attaaaggctgctcattgttttcataatctttaaagccaggattccattgaaaaaattga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attaaaggctgctcattgttttcataatctttaaagccaggattccattgaaaaaattga 456

                                                           
Query: 484 cagacaaatcaaatcaaatcaaatcaaatcaaatcaaatcaaagcaaa 531
           ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 455 cagacaaatcaaatcaaatcaaatcaaatcaaatcaaatcaaatcaaa 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)